MmuINT0042135 @ mm10
Intron Retention
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4117255-4119221:-
Coord C1 exon
chr16:4119033-4119221
Coord A exon
chr16:4117669-4119032
Coord C2 exon
chr16:4117255-4117668
Length
1364 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
ATTCTTACTATCTCTTTTAGGGT
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATGGCCATTTCTCCTTCACGGATGCCTCAGCCTCCAAATATGATGGGCACTCATGCCAACAACATTATGGCCCAGGCACCTACTCAGAACCAGTTTCTGCCACAGAACCAGTTTCCATCATCCAGTGGGGCAATGAGTGTGAACAGTGTGGGCATGGGGCAACCAGCAGCCCAGGCAGGTGTTTCACAG
Seq A exon
GTACATTCACTGAGGGAGCCTGGTCAACCAGTATTTATATAGCCCCAGCCTTTGTGACATGATCCTGTCTTAGTTGATGGAAACTAGAATTCTAGAATATACATCTTTCCATTTCCCGTTTGCCCTATAATTTTTAATTTGTGTTTAATTTTTCTTGTTCCCTCTAGGTAAACTTCACACATAAAGTAAAATGGATTGTGGTTGTGGGGGTTTTGTTTGTTTGGTTTTGGTTTTTGTTAGTTTGTTTTGTTACTCTTATATTTTTACCTTTGGATTTTGGTTGCTGTTTGTGTGCTTTAGAAATCTAAGATTAACGTCATTCTGAGAAATACTGGAATTTTAAGAAGGGGTGAATTTTCTTTTAGTGACTTGGTTAGTTTTTTGTATCTTAACTATGTGTTGGGGTGACAGAGCTGTCAGAATCATGGGAATAGCACTCTTCTCATGAGCATGTTCCAGTTACTTAGTCATAGCTGAGTTCCCATCCAGTTTACTGCTTTCCCTCACTTTGGTAGTGCATCAAGTGTCAGCTGCATACAAAGTATTTCAAATAGGCTAAATCTTTCTCAAAATATAAAAGTCCTGTCCTTTTAAACACTCAGCTGATGCTGAATGCGTTGTTGAATATATTAGGTTTACTCGGGGATGATTAATTTTCCCTATCATTTCATTTCTTTAGAACAGAGATAAGGAAACCAACTCTATTCCCTTTCCAGAGTCTCTCCATGTAGCCCAGGCTACACTCTTTATATCTCAGTCATTTGCCACAGTGACCAGTAGTTTCAACAGCCAGATAGTAAATATGTTCTCTTTCCAGAGTCATACTCCTAGTCGTTCGTAACTGTTTAGCTCTGCTCTTAACCGTGTACAAGTAGTTACAGACAATGTGTAATCTCCTTGTGGTTGTCATCCTATAAAACTGTTGGTGGTACCTAGGTCAAATTTCTCTCTGGAACAGCCATTGTGATTCTTTTTTTAAAGTTAGGGGTCTCCCCAGTGCTCTATGTTCTACTGTCTCAACTTATTTAAAAAACAAAACAAAACTCCTTTTTCTGTGGTCTAAGTTAAAAGTAGATGTGGCAAAACATGAAGTTAGTAAACTAAGTAAATATGTGCCTAAGCCATGACTATTGTAACCTGATATTGAAGTTCTATAAGTCAAAGTATGAGAAGGATTTTAGTGCTAATTTTATTACATGGTGTGGTGCATGCTATAAATGGTTAGTCTGAAGTTTTACAAATGCAATATCCTCCTGAAACTAGCAGAACTAGTTAAGAAACTAGTATAATTTTTTTTTTCTACAAGTCCCTCATGGTTTCAATTGGGTAAAATAGTTTTTATATATTCTTACTATCTCTTTTAG
Seq C2 exon
GGTCAGGTACCTGGAGCTGCTCTCCCTAACCCTCTGAACATGCTGGCACCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGTCACCATTGCACCCGACTCCACCTCCTGCTTCCACAGCTGCTGGCATGCCCTCTCTCCAACATCCAACGGCACCAGGAATGACCCCTCCTCAGCCAGCAGCTCCCACTCAGCCATCTACTCCTGTGTCATCTGGGCAGACTCCTACCCCAACTCCTGGCTCAGTGCCCAGCGCTGCCCAAACACAGAGTACCCCTACAGTCCAGGCAGCAGCACAGGCTCAGGTGACTCCACAGCCTCAGACCCCAGTGCAGCCACCATCTGTGGCTACTCCTCAGTCATCACAGCAGCAACCAACGCCTGTGCATACTCAGCCTCCTGGCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521:ENSMUST00000023165:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGCAATGAGTGTGAACA
R:
GGGTACTCTGTGTTTGGGCAG
Band lengths:
345-1709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types