GgaINT0013492 @ galGal3
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13227572-13229359:-
Coord C1 exon
chr14:13229171-13229359
Coord A exon
chr14:13227989-13229170
Coord C2 exon
chr14:13227572-13227988
Length
1182 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
GAGAATCTCTTTCCCTCCAGCAG
3' ss Score
7.17
Exon sequences
Seq C1 exon
ATGGCAATGTCTCCTTCCCGAATGCCTCAGCCACAGAACATGATGGGAGCCCATTCCAACAACATGATGGGTCAGGCTCCTACCCAGAACCAATTCCTGCCCCAGAATCAGTTTCCAGCTTCCACAGGGGCTATGAATGTGAACAACGTTGGCATGGGCCAGTCAGCAGCCCAGGCAGGGGTGGCACAG
Seq A exon
GTACGATGTATTTTGTGATACCTGTGTAATTAATAATTTTGGTCTGATGTACTTTATTTGTGTATCTCTGTGTTTCATTGTTTATTGCAGTCATTCATGACTTTCAGGAGTACTGCCTCCATATGCTAACTTGGGTTATGTCCTATCATTCCCAATGTAAATTCTAGAAAATACGCTGATGGGATGTTTAGGGGAGTATTAGAAACAGTTCATGGGGCATATATGAGTGTACACTTTGGATTTGCATGGACGTTATCAGCCAACTTTAAATCAAGAATTACAGTAAAGTGGCTGGGGGAGGTCTTCTATAATCTTCCATAACCTCACTACTTCCAAGCAGAAAACATCTTCCAACAAGTAGATCTTTTTGTTGCTGTGTAATCGTTGTCAGTGAAGTCAGAGCTCATTTATGATGCTGAGGTGTATGTGTTTCCAGAGGAAAGAGATTTGTTGGGTGTTGTATTTTTGTTATTCGTTTTTTTGCCTAGTTTACAAGTAAAGTAGGTTAACTGAGACCTCTGAGGTTCTCTATTCCATCCTCGAAAGAGGGGAAACTTAGATTGTGGGACTTTTCTCAAAGCAAGTTTTGAACAGCTTCACAATGAAGCACCTGTCATTTCTTGGGCCCTGGTTCAGTTACTTGACCAGCTTTGTCAGGGAAAAAAATAAAAGCAGAATCCTGAACTTCTGTTTGTTAAAACTGACTTTACATAGGCAATATAGAAGCAAGTTTTAATTTAAATTAAGAACAAAAAAAAACGGATCTTAAGGCTTGTGTTTTGCAATAGGGCAGCCATTAAATGTGTTGAGCTCTTTTCCAGAGCGGGGCTGCTTTACAGTCCTGACCTAAAGTGTGTATTTGCTTGAAACTGTTTTGTATGCAAAGTGTGACCTTTGCCCAGCTAATGACATGATTTAGAGACTGTCTGCAGGTTTGTATTACTTGGGGATTGTGAGGATTCCTTCTCTGCGCTGGGAGTGTTTGTGGAAAGTGATGTGTAAGGCACATCTAAGTTTAGCATCAAGGTCTTTGAATAAAAGCTGACGAAAATGATGAGAGAAATCGGAGCACAATCAGCTGCACAGTGTAGTTAGATATGTTTTAAAGATTATGTCAGTGCTTAAACGTTAATTGTGAGTTTTGGGAGTGATGTGTCTGTAAGAGAATCTCTTTCCCTCCAG
Seq C2 exon
CAGGGGCAGGTTCCCAGTGCTGCTCTTCCCAACTCCATGAACATGCTAGGACCACAGAGTGGTCAGCTATGCCCACCAGTGACCCAGCCGCCTCTGCATCAGACTACACCTCCTGTGTCCACTGCTGCTGGGATGCCGCCTATTCAGCACCAAACACCAACTGGAATGACTCCTCCTCAGCCAGCAGCACCCACTCAGCCATCCACACCAGTCTCATCTTCAGGACAAACCCCTACACCGACCCCGGGTTCTGTTCCCAACGCGACCCAGACACAAAGCACGCCTACGGGACAGACTGCAGCACAGGCTCAAGTCACACCGCAGCCTCAGACCCCAGTTCAGCCCCAGTCTGTGCCAACCCCACAGCCTTCCCAGCAACAGCCAACATCTGTGCAGGCACAGCCACCTGGCACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000012587:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGATGGGTCAGGCTCC
R:
ATGAGACTGGTGTGGATGGCT
Band lengths:
347-1529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]