BtaINT0043792 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3081553-3083602:-
Coord C1 exon
chr25:3083414-3083602
Coord A exon
chr25:3081970-3083413
Coord C2 exon
chr25:3081553-3081969
Length
1444 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTTTTCCTTCTGCCTGTCAGGGG
3' ss Score
8.71
Exon sequences
Seq C1 exon
ATGGCCATTTCTCCGTCCCGAATGCCTCAGCCTCCGAACATGATGGGCGCGCACGCCAACAGCATGATGGCCCAGGCGCCTGCGCAGAGCCAGTTCCTCCCGCAGAGCCAGTTCCCGTCGTCCAGCGGGGCGCTGAGTGTGAGCAGCGTGGGCATGGGGCAGCCGGCGGCGCAGGCTGGCGTTCCACAG
Seq A exon
GTACTGTCCATCGTTTTAGTTGTCATTTTCTTAATTTTTGTTTGTATATTTTAAATTCTAAGCTTCACATGTGATCTGAGAGACACTGGTTTTTGAAGAGGGAGTGAGGAAAGATCCCTTGAGTTTACGCTTAATGATTTGGCACTTGTTGGTTTAAACTGCCGAGGTGAAGTCCAGCTAACTGGGCCATTTGAGTAGTTCCCTTCTTGTTGAATGTGGTTTTATTCATTCAATATAATGCTGGCGGGGACTATTTTCCACTCATTTCACCGCCTTTCCCCGACTTCTATTAATTGTTAGAGTACATCAGATTGCTGCTGTGTACAAATGTACACGTATTTAAAACAGACCAACTGTTCCCCTGAGAGATCAAATTCATTATTTAACTTAACATGAATAACATTGAATAATAGGCAGTGACTACACTAGATTCACTAAGTAAACACTTATTAAGTAATTGTTTTTTAAACGTTTTATTTGTTATGATTTACGTTTGGCTGTGCCGAGTCTTCCTTGCTGCGTGCAGGCTTTCTCTAGTTGCAGTGAGCGGAAGTTACTGTCAGCGCGCTGCCCAGGCTTCTCCCTGGGGTGGCTTCTCTGGCGGAGCATGGCCTCTAGGCATGAGGGCTCCAGTAGTTGTGGCGCGCAGGCCTAGTTGCCCCACGACATGTGGAATCTTCCCCGACCAGGGATAGAACCTGTGCCTTCTGCACTGGCAGTTGGATTCTTAACCGCTGGGCCACCAGGAAGCCTGATGCCTATTAATTAATTCTTTATTTGCATAAATTTTATTTCTCTAGCAAAGGGGTCGACAAGTTTGTCCTGTAGATATTTTCAGCTTGGTGGACCGTGAGGGAACTGTTCTGCTCCACTGTTGTGACACAGAGGCAGTCATAGACATGTGCATTCACACGTGAGTGAATGGAGAGGCTGCTGGCCAATAAAGCTTTATTGACAGAGACCAGCAGCTAGCTGGGTTTGGCCTTGGGCCCTGTGTGCTTGGCAGATTCTTGCTGTAGATTCAGAATAGCTTTTTAGTTGGCCCACAGGTAATTTTGAAGCATATCCCTAGCTGAGAACTACCATACTGAAACAATTCAGTGTTTGAGTAACTCATTTTTTTAAAAAAGACAAATACCTTTTCCAGTGGCCTTAGCTGTTGGTGGATATTATGGAACATGAGCTAGTAACTGAAGTGTATGTGTGTGTGTTTAAGCCAGAGATTTCTACACTTACATAAATCCAAGCTTGATTACTACAAAAGCAGGTTACTATAAGCATGCAGGTCAGTGACACGTTACAAGTGGAACGTTCCCGTATAGTCAGCAGACGTCATCCAGAAACCGTGTCAGGTTCTCATATATTTAATTCTTTATGTCTGCTGCCACATTGTCAGATGGAGGGGAGACCAGTTTTAACTCGCTCTTTTCCTTCTGCCTGTCAG
Seq C2 exon
GGGCAAGTGCCAGGGGCCGCTCTTCCCAACCCCCTGAACATGCTTGGGCCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGCCTCCGCTGCATCAGACCCCGCCTCCCGCCTCCACGGCCGCCGGCATGCCGTCTCTGCAGCACCCAGCAGCTCCCGGGGTGACGCCCCCCCAGCCAGCTGCGCCTACCCAGCCTTCAACTCCCGCGTCGTCTTCCGGGCAGACTCCCACCCCGACTCCTGGCTCCGTGCCCAGCGCCAGCCAGACGCAGAGTACTCCTACGGTCCAGGCAGCCGCCCAGGCCCAGGTGACCCCGCAGCCTCAGACCCCAGTGCAGCCTCCATCCGTGGCCACCCCACAGTCATCGCAGCAGCAGCCAACACCTGTGCACACGCAGCCCCCCGGCACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403:ENSBTAT00000005092:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGTGAGCAGCGTGG
R:
TAGGAGTACTCTGCGTCTGGC
Band lengths:
343-1787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]