DreINT0051904 @ danRer10
Intron Retention
Gene
ENSDARG00000104148 | crebbpb
Description
CREB binding protein b [Source:ZFIN;Acc:ZDB-GENE-050302-102]
Coordinates
chr3:9686983-9689247:-
Coord C1 exon
chr3:9689065-9689247
Coord A exon
chr3:9687313-9689064
Coord C2 exon
chr3:9686983-9687312
Length
1752 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCCGTCTCTCCCCCTCTAGCAG
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATGGTTATGTCTCCTTCCAGAATGCCGCAAGCTCAAGCCATGATGGGAGGACATGCTAATAACATGGTGGGCCAGACACCCAACCAGAACCAGTTCATGAACCAGACACCGTTCCCAGCCTCGGCCGGGGGCATGAATGTGAATGTAAACCTGGCCCAGCAGTCAGGACAGACTGTCCAACAG
Seq A exon
GTAAGGAGTCACAAACTTCGGGCTTTCTTTTGGCGTAGTGCTACCAGTGTGTCAAAACATTTTAGTGCTGATAACACTGTGCAGTAGTGCCCATTTACTTTTTTTATTTTAATTTTTTTTTTATATATATTTTCCCCATTCATTTTGTACATAGGGGCAGATTTGTGTGTGTTCAGCATCAGTTAAGACAATGTTAGCACCTGTTTGCTTTAATTGTGGGAAAACTAAATAATTTTGAGCTGTTAGCTTATTTCAGCTTCCGGGTTTAAAATGATTTTTGGGGCGGGATCAAAATCGGCGCAAAACTGCAAGTGCAAAGATGAAGCATCAGTTTCTCATTATTCATAGCGGAGTTTTCTTATCTTATGAGAAGAGCCGGCTTCTTAATTATTCATGACTGCGCATGTAAAGTCTGCGGGATGGAATTTTCAGGTAACTGTTTGCCACATCTAGCACGAGAGCTTCTGTTTAATCCTTCATATCCACTTGTTAAGTGGTGACGTGTTTGTGACGTATGTAATACTGTTTCCGGGTCCAAGCCGCCATTCAATTGAGTGGAGAAATCATTCGTTTATGATCACTTTTTATTCCTATCACACATTAAAGTTACTTTTACATAAAGTCATAGTGTACACAACAATCTCTGGGCTTGCTACATAACAAATACCAACATTTTAACAATTTATAAAAAAATAATCACTTTCTGGCCATTGGATATTAGGCATGGACATATATACTGCGATCGTGACTTTCGAAAGTATTAAATCGCTTTGTAAACGTTTATCATTACCATTTCATGAATCTCCCCATACAGTTGAATAGAGCGCTTGGACCCGGAAGCCGCTCCGCCGACGTCACACTTAACAAGCGGAAAATTGCCAGATGCTGTCCGCTGGGCAAGTGGCAGCTATATGTCAAATTTAACACCACGTACACCATGGCAAACGGGCTTGCACTGAGTAAATTAATATCGCTACTCATGAAAAGACCGGTATTGCTATTAACATGACGTATGCAATATCAGTTCCCACCCGTGAGAACAGCATAGTTAGCTGTTCTCAGACACTAGCAGACACTAGTTCACTTTATTTTAATGATAAAATGGGATTTATTTGAAGAGTAAATAGTACAGTAAGCTATAATACCTAATCAAGTTTTTACCTATTTTCTATCACAGTTACAATTCTGCTTGCCAGAATGGCCAATAATTATTTGCTAGAAATGGCAACAGCCATGGGAAAGGAGAAAAGTTTTTGTAAAACTTTGGGAAAAACTCTGAGGGATAAGTTTGTTAAAACAAAAAAGAGGCCCCCAAAAACATCTTCAATGATAATGATTATCTTTTTATTCGTCTGATTTTACTTTCTGTTTTTTTGGACCGACCCCTGTCATTTAAAAAAATATATCTCAATGGTGAATGTGTCAAGTATAAAAGCCTTAATCTGTTTCGTCAGGGGTGCATTTAACCTGACTTTACTACTGTTCAATTTAAATAACTTTATTTTACCCCTAATTTTGTGCTTTTACATTTTCTCTCGCGTGTTTTTGATATTGCGATATAGGTCTTAAATTTAATACTTAATGATCTTTAAAAGGTCTTAAATTTGACATTATGATATCTGCAGAGACGCTGCTTTAATAATCAGTTCTTCTATGGGTAAAATGAATGGGATTTGTCCTTCCTCTTCTAAATGTATCCGCAGTAGTTTGGCTGTATCTGAGTGGCTCTGCGCTCCGTCTCTCCCCCTCTAG
Seq C2 exon
CAGCAGCAGCAGAACGCTAACCTGACCCTGAACGCTGTGGGCTCTCTGGGCCCGCCGTCCGCCCTGTGCTCCACCCCTCCTCCGCCCTCCGCCTCCACCCCGTCAGCCGCTGCCAGCCTGCAGTCACTCCAGACCCAGCCCTCCACGCCAGCCTCCGTCGGGGGCCACGTCACGCCCACCCACATCCCCAGCGGCCTGCCCCGTCCTCCCTCTGTCCTGGGCTCCTCCCCTGCCCCGTCCCAGCCGCACACACCCTTGCAGTCCCAGCCTGAGCCCCCCATGCAGATGCAGCAGCCCACCTCTGTGCAAGCGCAGCAGCCAAGCACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104148:ENSDART00000168366:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAACCAGACACCGTTCCC
R:
GGGACTGCAAGGGTGTGTG
Band lengths:
353-2105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]