DreINT0051913 @ danRer10
Intron Retention
Gene
ENSDARG00000104148 | crebbpb
Description
CREB binding protein b [Source:ZFIN;Acc:ZDB-GENE-050302-102]
Coordinates
chr3:9676998-9677224:-
Coord C1 exon
chr3:9677168-9677224
Coord A exon
chr3:9677076-9677167
Coord C2 exon
chr3:9676998-9677075
Length
92 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
CTCTTTCTGAATTTGTTCAGCTT
3' ss Score
6.04
Exon sequences
Seq C1 exon
TATGATATCAAAGGAGCAGTTTGAGAAGAAGAAAAACGACACGTTGGACTCTGAACC
Seq A exon
GTAAGTCCTGCCATTTTGATTTTCATCAAATACATTGTATAGAATGGAGAAGACATAAACATAAATGTTTTCCTCTTTCTGAATTTGTTCAG
Seq C2 exon
CTTTGTTGAATGTAAAGACTGTGGCCGGAAGATGCATCAAATCTGCGTACTACATTATGACGTCATCTGGCCATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104148:ENSDART00000168366:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGATATCAAAGGAGCAGTTTGAGA
R:
CCTGATGGCCAGATGACGTCA
Band lengths:
135-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]