HsaINT0041354 @ hg19
Intron Retention
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:2348]
Coordinates
chr16:3795278-3799684:-
Coord C1 exon
chr16:3799628-3799684
Coord A exon
chr16:3795356-3799627
Coord C2 exon
chr16:3795278-3795355
Length
4272 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
GCGCCTTCTTTGCCTCCTAGTTT
3' ss Score
6.88
Exon sequences
Seq C1 exon
GACAATTTCAAAGGATCAGTTTGAAAAGAAGAAAAATGATACCTTAGACCCCGAACC
Seq A exon
GTAAGTATATAGCTATTTCTTTTTTACTTTCAGTTTTGGTTTGAAATCGGTAAAGTTACTCCTTATGGAGTGGGTTGTGGGTAAAAACATTGGAAATATGTTGCCGTAAGTGGAATTTCTGGTGTGAGGTTATCTTTTAGATATAGATTTCTTTTAAACTTAAACAAAATATGTATGTCTCTGTAACATGTACTCTAGTTACTGGATTTTAACAATGATAAGATTAAATGGATGTTTTAGTTCTATGAGAACCTCTCTAATAATTTGGTCATGGGTGTCTTTAAGAAGCCATTTAGCATGAATCTTTAGAGACCAAAGGTTAGGAGTATTTGGTGGGGTAGTACTAGTAGTATCGTTTAAAGGGAAATACCAGAAAGAAAACCTCTTGGAAACTGCTTTCTCAAATAATGTAAAGCTTGGCACATTTTCTTGCCATTGTTAAGCACTTTTTTTGTTGTTGTTTTTGTTTTGTTTTGTTTTTTGAGACAGTCTCGCTCTGTCCCCGAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAGGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCAGGTGATGTGCCTGTCTCGGCCTCCCAAAGTGCTGGGATTCCAGGCGTGAGCCACCGCGCCCGGCCCTGTTAAGCACTTTTCTACAGTGATGAGTGAGAGTGCTGCATTTGCTAACCTTGCTTCATAACAGCCCCTAAAGAGACTTCAGATTTTTTTCAGTGTGGTAGCCTCTTCCCAGGTCCCCAATGTAAAGTTCTGAGGGCGCTCCAAATTGGCATGGCGATACTGGCTATTTTTTGTCCCCAGGGTGAGCACAGGCTCCAGGAGCGTTGGCTACTTGGGAAGTGTGGGCTGTGACTCAGCCAAGGCAAGAAACAGACCCTGCTCTCCCTATCCTGACCCTCTCCAGGGAAGCCAGTGGCTAGAGTGGCAAGCACAGATTTCTACCCAGGCCACCTCTGGAAACCTAGCTTGACTTTTGGCAGGTTACTTCATCTCTACCAGCACATGGTACACAGACAGGACGATGATGTGAAATCCTAGAGCTGTAGTCTTGGCGAGATGCCAGGGCAGAGCGCCCACCCCTCTCATGACCATCGGATTGTTTTTCCTGACTTTCCACCTTTCTTTTCACATTGTGTCTTTCTCTCCTTGGCTTTATAGTTTCATTATTATTTATATCTACTTTTCTTTCCTTTTTTTTTTTCCCCCTGAGACAAGTCTTGCTCTGTCCCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAGCCTCCGCCTCCCAGATTCAAGCAATTCTCTGCCTTGGCCTCCCAAGTGGCTGGGATTACAGGTGCCCGCCACCACGCCCAGCTAACTTATGTATGTATGTATGTATGTATTTATTTTTATTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTCAGCTCACCGCAACCTCCGTCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGGTCCACCCGCCTCGGCCTCTCAAGGTGCTGGGATTACAGGTGTGAGCCACCGCACCCAGCCTGTATTTTTAGTAGAGACGAGGTTTCACCATCTTGACCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAATTTATATCTACTTTTCAACTTCAAAATATATTACATTCAAGTAGTAGGTGCCAGGCAGAGGGAACACATGGATGAGTGAAGGGGTCTCCTTCCTGCTGGTTGTAGTCTAGAGAGACAGCTGGGTAATGGCACAGCCTGCAGCAGGAGACAGTACAAGTGAGTCCCAGACAGAAGGGACCCTGCTTGGGCAGAGCGGCATCACCACAGTTGCGCCTGGTTTCCTGGACAAGATGACATTTACATTGAAGCTGCAGAGCATTCTAGAAACAAAGGCATGAAAGAACACAGGTTGCTCAATAAAACTACAAGGCCCCTAGAGTGGGTGGTTGGTAGGCAGAGGTTAACTTCATGAAGGGCCATTACACTGTCTCTTGACGTTTAGACTTTATCCTATAATGTGCTGAGGAGGTTTTGAAGAATAGCACTGGTTCTAGTGTAAGAGGGTCATCTTTGGTCTATGAGGTGAACTGAACAGAAGAGGAGAAGACATTGTTCTGTAGTAGAGAAGTTAGTTAAGAGACACAAAGCAGGAGAAGGCAAGAAACTGAAACACCAATTAAAGCAAGAGCTTTTGGAGCCAGGCAGGGGGGCTTGCTGGGGGACTGAGGGAAGGGGAGACATCTAGTTGGCCCATAATAATTGGGAGTGGGAGAAAGGGGGAAATTCAAAATGGATGTCATGGGGTCTAGAATATGCAGTGTGTTTTGTTTGTTTGGATTTTGTTTGTTGTTTTTGAAACAGGGTCTTGCTGTGTCACCCAGGCTGGAGTGCAGTGGTGCAGTCATAGCTCACTGCAGCCACAACCTCCCAGACCCAAGCAGTCCTCCCAGCTCAGCCTTCTAAGTAACTGGGACTACAGGCACACACCACCATGCCCAGCTAATTTTTAAATTTTTTGTAGAAATGGGGTCTCCCTATTTTACCCAGGCTGGTCTCAAACTCCCAGTAAAGCAATCCTTCCACCCCAGCCTCTCCACATGCTAGGATTACAGGTGTGAGCCACTGCACCTGTCCCCAGTGTAGTTTTGGGGGACACTCCTTTCCCCTGACATGGGAGGGAAGAGTTGAGAGCAGGGGACCTTTGGAGACGGCACAGGAATTGAGGAAGTTCTTGGCCCCAACCTTTGAAATTCTTAGCGTTGGGGATGAGCTCAGTGGCTGAGTTGTCAAAGACAGAGCTTGTGGAGGATAAGCACTGGAGGAAAGGAGTGCAGATTCAGAGCAGCTGCCACGTGGAAGGGAGAGGTAGCCAGACAGAGCCGGGCTGTCAGAGAGTGCCATAGGACCATGAACGGGTGCCGCCATTTGTGTGTGTGTGTTTTTTTTTTCACAGATCTGTGTGTGTGTCTTTTCTTTCCCTCCAGCAGACTGGGCAGAGAAGCCAGATGAGGGTAGACCCATGGCTGAGGGCTTGCATAGCACGTGCAATGGACAGATTAAGGGGACGAGGGCAGGGGCACACTTTAGAGGAGCTGTAGCTCAAAGCTCAGGAGCACACAGGGAATCACATTACTCACCAGTCCCTTCAGCCTATCCTCGGAGGTATGCATTGTGGTGGCAGCAAGGGAGGGAGCTGACAAAAACCCAAGGTCTTGACCTCAAAATGTCATCTTGGCATTTAAGATTCCTGGGTTGAGGCGGTTCCTGGAGGTGACGGAGCCCTGGTGGGCCGTGGTTGTGGGCTGCCGTAGAACAGTGTGGAGGATTCGTGGGGAATGGGTGGTCCATTCTCTCGCTTCACCAGTGTTTACTTGAATAAACCCTTGTCAACTTGCCAGTAGGCCTGACACATTCCACCTTTTGTAACTGACTCAGAACTGGTGTTTTTGTGCCTCGCGCCTAGCGTGGCTGCTCTGAACTGGCCGTGTTTCCCATTAGTATCCTCAACAATTTTAGACTTAAGAGCACATGTTTAGAACTCAAAGTATTGTTCTCTATTTTTTAAGTCAGTTTTGGCATGTGAAATCACCTAGAGAAGGCATTGTTCTTGCAAATGTGTAGCAGTGTCAGAAATACCGGCCTGTGAAATATGTATTTGTCGCAGCAATTTTTAAAAAGTAAAGTTTCCTTTCTGGTTGCAAAGGGAGATTGGGAGAAAAGAGGAATGAAGCGCTTGTACAAACAAAAGAAGAAAGCTTTTTCCTGTAGAAGATATCATACGGATGCATTGTAAAATATAGCTGAATCAGCCAACACACGCATTAATGTCAGCACTACTCAAAGTAACCCAGAGAACAAGGTGTGGACGCACACACAGACTTCTACAAGTGACTCTGGTCTTGTGGTTCCGTGTGCTTTAACAGTGCGCCTTCTTTGCCTCCTAG
Seq C2 exon
TTTCGTTGATTGCAAGGAGTGTGGCCGGAAGATGCATCAGATTTGCGTTCTGCACTATGACATCATTTGGCCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339-CREBBP:NM_004380:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(23.4=55.0)
A:
NA
C2:
PF0062824=PHD=FE(55.3=100),PF127602=Zn_Tnp_IS1595=PU(27.3=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)