GgaINT0013500 @ galGal4
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12510369-12512398:-
Coord C1 exon
chr14:12512342-12512398
Coord A exon
chr14:12510447-12512341
Coord C2 exon
chr14:12510369-12510446
Length
1895 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CTGTTCCTTTTCCTTCTCAGGTT
3' ss Score
12.38
Exon sequences
Seq C1 exon
AACCATCTCTAAAGATCAGTTTGAGAAGAAGAAGAATGACACGCTAGATCCTGAGCC
Seq A exon
GTAAGTAACCAGGCCGTTCTTGCTGCTAAGATCACACACGACTTTCACTTGTCCTCTAGCCAGCACCTCAGAAGTGAGAGAGGGGATAAAGAACTCTTCCTTTTTCTCCCATCTCTGCCCAAGCAGACAGTGACACCTTTCTTGGTGACACCTTTGGTACCAAGACCTGAGTGTGAGCCAGTTTCAGTGGCCATTCCTCTCTCTGTTTGGCTGAAATAGAACTCTCAACATTTGAGTGCTGTGCTCTTCCCTTCAGTATTTATGTATTTATAAGTAGCCAGAGGGAGGGAGGTTAGAAATACAGGTGCTTCTAGCAGAAGGGGTTAATTTGTTTAAGCCCTCAGTTTAAGTAGGCTGTTTTGTTCCTTAGTTTAGAATAATTGTTAGTATCCTACAAATAAAGGGCAAATTTACACATCTGCTTTTTAAATGCAGACCTTTCTAATGGCTGTCACTGCTGAAAAAGGGCATGCTCTGCACTGCATGGTTCTGCCCTGCTGCTCTGGTGCTGCTCTGTCCCTAGGAGCTAATTCAGAGACTGGTGGTTGCCCGCATCATGCACTGACAAACTAACCCAGGACAAACAAAATAAGCAGGGGGCATTCCATCCTTGCTGTGTTGAACTGGCTCAGTAAAGCTCCAGCAAGCACCAGAATGGCATTGCCATGGGAGTGACAGAAGAGCAGGATCGCCTTTCCTGGTGGTGACCTGCTGCCTTGCCATAACCCCATGGGGAACTTGTCCCTGCTGTGCAACCCAGCTACACGTGCTGAACACTGAGGAACGACCTTGCTAAAAGAAGTGAAGTAGAAAGCTTGAAAGAATTTAAGGTTGTGTGAAGCAAAAAGCTGGCAAATGTTTGAAGTACCTTACTTCCTTGTAACTTACTTGTTGGTTTTATTTAAGTAATTCCTAAGGCGTATTGTGCCCTGCACTGCACAGCCTGGTGGCCCTCCATCATAGTGAGCATTTCATCCCAAGCACCTGGTGGTTTGCCATCCTCCTCTTCCCATCTAGCTAGACTTCTGAAACTCCTTTTTCACTTCACCTGAGCACCTGCCACTGCAAGGGGCATCCTTCTCATGAGTTTGTTAGCTTTGGGAAAGTCACGTGGGATGTTTCTGTAGCAGCAGTGTCATGCTTCCTGCTGTCCCCAAGTGGCTGCAGCAAGACTTAATCTTTGCTCGTTTGTTCTCTGGCAGTTTGATCCTCTTTTCTCATGCTTGCAGGTACTAGGTAGAGCTGCTCTGCCTTTTGCAGGCAGGCTGCTGAGCTCACCATTGTGGTGGAGTCCTAAACACTGTGGCTGCCCAGACAAAAGAGACATTTATTTTGAAGGATCTTTAAAAAAAAAAAAATAATAAAATAATCAGAAAACTCCACTGCAGACCCATGCAGGCAAAGACATGTTAATACATGTCTTCTTGGCGTGCTTATTCATGAATGACTTGCTCTTACATCTACAGTAAGTTGAGCAACCATTTAGTCAGCTTGTGGTTGATGCAATAACTGACAACTAAGTCTGTAAAGGTATTGTTAAGCAGAATTCTGTGAAGCTGGGAAAACTCAAAAGCTCTGCTTAGAAAAAAATAGGATCGTAGGATCGTAGAATCACCAAGGTTGGAAAGGACCTCTGAGATCATCCAGTCCAACCATTCACCCATCACCAGTATTTCCCACTAAACCATGTCCTGCAGTGCAACATCCAAACGTTTCTTGACCACCACAAAAAAGAGAACTCAAGAGTTCACATCTGACACTTGTAACTACTAGATTTGCAGGTCTTATAGATGCATGAAGAGTAGTGAAGGGTTGGGCTGTTGTTCTTTCTGCTGAATTCTGGAAAATTACCTGCCTAGCAACAGAAGTGACGGGCTGTTCCTTTTCCTTCTCAG
Seq C2 exon
GTTTGTTGACTGCAAGGAGTGTGGTCGGAAGATGCACCAGATTTGTGTATTACATTATGATATTATTTGGCCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000039566:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]