DreINT0053253 @ danRer10
Intron Retention
Gene
ENSDARG00000068680 | ctrl
Description
chymotrypsin-like [Source:ZFIN;Acc:ZDB-GENE-040912-147]
Coordinates
chr15:37922050-37924749:-
Coord C1 exon
chr15:37924668-37924749
Coord A exon
chr15:37922231-37924667
Coord C2 exon
chr15:37922050-37922230
Length
2437 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TATGTTTTCTTCCACTCTAGGCC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GGCTGGATATCACTATGTGATTCTTGGAGAGCATGACCGCGGCTCCAGCGCTGAGTCTGTTCAGGTTAAAAGCATCGCTAAG
Seq A exon
GTACAGTAACATCTTTAAGAGGACCTATTATGCAAAAATCACTTTTATAAGGCTTTTAAACACCGCTGTGTGACAACATTGTTCGAATTTAAGCAGCTTACTCATAATAAAATGTATTAATTCTATATTTATTATCACACTTGATAAAAGCAGTGTGCGGAAACACTTTGATTGACATTCTCCTGTACGTGTTATCAAAGGGGGAAAGCTCCGCCCACTAGTGATGATCTCTTCCTCATTGCATAAACAATCCTAAATGAGAAGCAGCCGTCTGCCATTTTAATGTCAGTGACTAATAAATGTGAAGTTTCACAAATGATAGCGTTAGTCCTATTTTGAATCTGTCACTATGCTGGCGCATAGGCATTTGTAGCTCCACCCTCTTTTGAAAAGTTGTCTGGAGCACAATATCAGTTGCATTTAAAGTGACAGTAATCCGAATGGCACAATTTGAATTAAAGCCTAAAAGGGGCTGTTTTAAAGAGTTATAAAAATATATCTGTGGGGTATTTTGAGCTGAAATTTCACATACACACTCTAGGAACATCAGAGACTTATTTTACATTTACATCTACTTTTTTCATCCCATTAAAATGATATTGGCCCAGAATACCTTTCATTTGACTCACTGTCTGCTCAACACATTATATTGTGAGCATCTGAAACCACAGAGATTTGTCATTATGATATACAGTACGTAAAAGTATTGCTTGCTTCCTTTAAAACAACAGTTTCTTAGAAACAGACACCTTTGTGTTTGAGCCACAATTTACTCTTTTTTTTTCTTTGTAAAGCCACAAGATTTGCATTTTTTAAATTTGCATTAAACGTGATGGATATCAGTGAAGCCTCTATAAAAACCAAAGTTCTCAGTAGATTTAAAGGTCATTCAATTGCTTACTACAAGAATTACTTGTAACCATTCAAAAGTACGAGGTCATTAAGATTTTTAAGAAATAATGGGCTTACTGTATGGCTTACTGTATTATTACTTACTCATATTCAGCAAGGATGCATTAAATTTATGATAAGTGCCAGTAAATGCATTTCAATGTTATACACTATTTCTGTTTCCAATGAATTCTGTTATTCTGAACTTTCAGTTCATAAAAGTATCCTGTATTTTCTACAGAATTTTGTTTCTACAAAAATACTAATCAGCAAAACTGTTTTCAGTCTAATAAGTTCATAAGAAATTTTGCTTTATGGCATTAAATCAGCATATTCATCAGCATATGATTTCTGAAAAACAGTGTCACTCTGAAGACTGGAGAAATTGGACACACTCTTTTCAAATCAAATCAAATCAAATCAAATAGGGGCAGGATAGTGGCTCAGTGGTTAACACTGTTACCTCACAACATGAAAGTCGCAAGTTAGAGTCCCAACTGGGTCAGTTGCGCATTTCTTTGTGGAGTTTGCATGTTCTCCTTGTGTTTGTATGGGTTTCCTCCGGTTGCTCCGGGTTCCCCCACAGTCCAAAGACATGGGCTATAGCTGAATTGGATGAACTAAATTAGAAGTAGTGTGTGTGTGTGAGTGTATAGATTTCTTGTTACTGAGTTGCTACTGGAAGGGCATCCGCTGAATAAAACATATGCTGGAATAGTTGTTCATTCCAGTCCATTCGGCTGTGGCAACCTCCAAAAAATAAAATAAAATAAATATAACTTGGAATTGTAGACTTAATAACTTTGACTTGTGATAGCCTTTATATTCTGCTACTCTCTAAGGATTTGAAGTGCTTCTTGTATCCTCATTTATCATTTAAGTCCACATTAAGTCTCTTTGGATAAAAGCATCTGCTAAAAGAATATATTTAAATGCAAAGTTCTGCAGAAATGTAAGCTTTGCAATTATAGGAATAAATAATTTCTGTACTTTGAGTCACTATCTGCAAGTATCGCTTGCTTCATTTCAAATTGTTTGAGTCAAACTGTCTCCTTTTTATATAGGCAAGTCATTTTATATCAGTGGTTTGTTCTGTAGACAATCGAAAAAAAATGTTTAAGGGGGCTAATAGTATTGACCACAAAATTATTTAAAAAAATAATAAAAACTGCTTTCATTCTAGTTGAAATAAAACAAACAAGACTTTCCCCACACGAAATAATATTATAGGAAATTCTGTGAAAAATCCCTTGCTTTGTTGAACATCATTTAGGATTTTTTTTTTTTTTAATTAAATTAAATTTATAATTTTAATAATTCACTTTAGCTGTCTGTAGGTCATTCTTTGGTAACTCACAGTGCATTAATTTTAACAAGTTTTGACTTTGGATTTTAATAATTCATTAGTAAATGTTGGAACCATAATAAATGCTGTACTAGTATTGGTTATTACTTATTCACGTTAGCAAATGTATTAGCTAATAAAAGCTTATTGTAAAGTGTTAACATTTAAATTAAACAGACAATATGTTTTCTTCCACTCTAG
Seq C2 exon
GCCATCACTCATCCTTACTACAATAGTCAGAACTTCAACAATGACATTACCCTGCTGAAACTGTCCTCTCCAGCCCAGCTGACGTCTCGCATCTCTCCTGTGTGTCTGGCGGCCTCCTCCACCAGCATCCCATCTGGAACTCGCTGCGTCACCACTGGATGGGGCAAAACTGGAAGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068680:ENSDART00000099425:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(26.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]