RnoINT0043265 @ rn6
Intron Retention
Gene
ENSRNOG00000019353 | Ctrl
Description
chymotrypsin-like [Source:RGD Symbol;Acc:621501]
Coordinates
chr19:37906317-37906728:-
Coord C1 exon
chr19:37906647-37906728
Coord A exon
chr19:37906498-37906646
Coord C2 exon
chr19:37906317-37906497
Length
149 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GCTCTTGACTGGCTCCACAGGCG
3' ss Score
6.23
Exon sequences
Seq C1 exon
GCCTGGACGCCACTTTGTCATTTTAGGAGAATATGACCGATCTTCCAATGCTGAGCCTATACAGGTGCTCTCCATCTCGAAG
Seq A exon
GTAAGTGCTGGCTGCACACGTAGAAAGGGAAAATGGGTTGCAGGTGTTCTGCTTTGGACATGGGAATTCAGGCTTGCCCTGACTTCCTCACCTCAGCGCTGGCCTCGGTGCCTGTGCCCACTTTACATGGCTCTTGACTGGCTCCACAG
Seq C2 exon
GCGATCACACACCCTAGCTGGAACCCCAACACTATGAACAATGACCTGACTCTTCTGAAGCTTGCCTCACCAGCCCGGTACACAGCACAAGTCTCACCAGTCTGCCTGGCTTCCTCAAATGAGGCACTTCCTGCAGGCCTCACATGCGTCACCACTGGCTGGGGCCGCATCAGTGGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019353:ENSRNOT00000026361:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACGCCACTTTGTCATT
R:
CAGCCAGTGGTGACGCATG
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]