DreINT0054115 @ danRer10
Intron Retention
Gene
ENSDARG00000053966 | cyp17a2
Description
cytochrome P450, family 17, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-100822-1]
Coordinates
chr23:45828217-45828597:-
Coord C1 exon
chr23:45828511-45828597
Coord A exon
chr23:45828412-45828510
Coord C2 exon
chr23:45828217-45828411
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
TATGACTTTTGACCTCACAGAAG
3' ss Score
7.35
Exon sequences
Seq C1 exon
ATTTTCCCCAACAAGGACCTGAAGAGGCTAAAGGAGTGTGTTTCCATACGAGACCAACTACTGTACAAGAAACTGCTGGAGCACAAG
Seq A exon
GTGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATATATTACTTTATGACTTTTGACCTCACAG
Seq C2 exon
AAGAGCCTGACACCTGGAGAGCCGCGTGACCTGCTGGATGCTCTCCTGATTGGTCAGCAAAGAGGGTCAGGTGGTGCTGATGACATCACAGAGGATCACGTGCTGATGACGGCGGCCGAGGCGTTCGGAGCTGGAGTGGAGACGACATCCACTACACTACTGTGGACCATAGCGTTCCTGCTGCACCACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053966:ENSDART00000076086:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.1=100)
A:
NA
C2:
PF0006717=p450=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAAGGACCTGAAGAGGC
R:
GCACGTGATCCTCTGTGATGT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]