RnoINT0044201 @ rn6
Intron Retention
Gene
ENSRNOG00000000428 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2461]
Coordinates
chr20:4487566-4487977:-
Coord C1 exon
chr20:4487891-4487977
Coord A exon
chr20:4487767-4487890
Coord C2 exon
chr20:4487566-4487766
Length
124 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCTTCCCCTGCCTCTGCAGGAC
3' ss Score
9.66
Exon sequences
Seq C1 exon
TTCTTCCCCAATCCAGGCCTCTGGAAACTGAAGCAGTTCCAGGAGAGTAGGGACCATATCGTAATGCAGGAGCTGAAGAGGCACAAG
Seq A exon
GTGAGCACTGAAGCTCCCCTGGCCTCATCCAGTGATGTGCCTGCCGCCCCCAGCCCCCTCCCCTATCACTGCTGGGCAGCGGTCCCTCCCCAAGCTTGACACCCAGCTTCCCCTGCCTCTGCAG
Seq C2 exon
GACAGCCTGGTGGCAGGGCAGTGGAAAGACATGATTGACTACATGCTCCAGGGTGTGGAGAAGCAAAGAGATGCCAGAGACCCAGGGCAGCTCCACGAGCGGCACGTGCATATGTCGGTGGTGGACCTTTTTGTCGGTGGCACGGAGACCACGGCTGCCACGCTCTCCTGGGCTGTGGCTTTCCTGCTTCACCACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000428:ENSRNOT00000031548:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.3=100)
A:
NA
C2:
PF0006717=p450=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTCCAGGAGAGTAGGG
R:
CAGGGTGGTGAAGCAGGAAAG
Band lengths:
255-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]