DreINT0054231 @ danRer10
Intron Retention
Gene
ENSDARG00000042956 | cyp2ad6
Description
cytochrome P450, family 2, subfamily AD, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-041001-157]
Coordinates
chr20:25626712-25627756:-
Coord C1 exon
chr20:25627615-25627756
Coord A exon
chr20:25627018-25627614
Coord C2 exon
chr20:25626712-25627017
Length
597 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CAACTGTGTTCCACCAACAGGCA
3' ss Score
8.72
Exon sequences
Seq C1 exon
GGAACTGTGATGATCACAAACCTGACCTCAGTGCTGTATGACAAACAGGAATGGGAAACACCAGACGCCTTTAACCCTAAACACTTTCTAGACTCAGAGGGCCACTTTTGTAGGAGAAATGCCTTTTTTGCCTTCTCAGCAG
Seq A exon
GTACAGTTGATCTAACTAATTACATCCAATGATCAGCGGTTAGCACAGTTGCCTCACAGCAAGAAAGTCGCTGGTTCGAGACCAGTTGGCATTTCTGTGTGGAGTTTGTATATTCTCCTCTTGTTTGTGTGGGTTTCCTCCGGGTGCTCCAGTTTCCTACACAATCCAAAGATATGCTATAAAGTGAATTGGGTAAGCTAAATTGTCTGTAATGTATGAGTGTGTGTGTTAATGAGTGTGTATGGATGTTTTCCAGTACTGGGTTTCAGGTGGAAGGGCATCCGCTGTGTAAATTGTATGCTGGAATAGTTGGTGGTTGATGATAAAAAAGGGACTAAGCCAAAGGAAAATGAATGAATGAATGTTCTGTGTGTGAAAGAATGACATGTTTCATTACCACACATATATTGAAGTATGAGTAAAACTTGACTTAATCTCCAAGCATTTTACCATTTTATCAGACTAAAGCCAAAGGAAAATGAATGAATGAATGAATGAATGGATGAATGAATAATCTGTTACCACATCACTGCAACAAATGTAATTCAGCCACGTCTCCTTAATGCTCAACTTCCCCCAACTGTGTTCCACCAACAG
Seq C2 exon
GCAAAAGGCAGTGTCCAGGAGAGTATCTGGCTCACTTGGAGCTGTTCATCTTCCTCACCATCCTCCTGCAGACCTTCAGCTTCAGCCCTCCTGACGGAGAAGAGCCCAGTCTGGACAGTCAGGTGGGCTTCACTCAAGCGCCGCTGCCCTACAAGATCTGCGCTCATCCCAGATGAACACCTGACCATCGACTCTGTGGCATAATGTCTCTGTGGAAAGAATATCGCCCTTATCTGCATTTTACTTATGACTGCATTCTGAGCTTTTAACATTGCAGGCGTGACACTGCATTTTCAGTCACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042956:ENSDART00000063064:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=PD(11.9=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGAGGGCCACTTTTGT
R:
TGAAAATGCAGTGTCACGCCT
Band lengths:
348-945
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]