DreINT0054233 @ danRer10
Intron Retention
Gene
ENSDARG00000013524 | cyp2ae1
Description
cytochrome P450, family 2, subfamily AE, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-090312-107]
Coordinates
chr23:42687784-42690158:+
Coord C1 exon
chr23:42687784-42687946
Coord A exon
chr23:42687947-42690008
Coord C2 exon
chr23:42690009-42690158
Length
2062 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TGATGCTAAAATGTGTGCAGGTC
3' ss Score
5.16
Exon sequences
Seq C1 exon
ATTGCAGAGAAGTATGGAGATGTGTGCACACTTTACCTGGGAACCAAGCCCTGTATACTGATGACTGGATATGATACTTTAAAAGAGGCTTTTGTGGAGCAGGCGGACATCTTTACGGACCGACCGTACTTTCCTATAGTGGACAAGCTTGGAAATGGGAAAG
Seq A exon
GTACAGGCAGACAGACACAGAAAATCTGAATTGCATTGCAGCTAATGTGCTTTTTGAGGAACGGCTTCCCATGCAACGTGTAATGCAGCTGTCGATAAATGTTAAAGGTCTGTGGAGTTTTAAAGATCAAAGTGCAGATGAATAAATGGTGGTTTCTGCTCTGCTGAAGCAAATCCACTTTGCTGCTCTTTGAAGGAAGTTTCGATTGAGATGGTAAAACCTATTCAGTTGTTATTTTCGTGTTACTTTCTTTAAAAGTGCTGAGGAAGAGCTGAAATGAAGATATGCTAATGGACATTTGGTTTCTGAGATGCACTGTGAGCCCTTGACCAATCACAACAGACTGGCCCATCAGACCAATCAGAGCAGGGTAGGATCAACTGACCTATCATGTCAGATTGGTCCATCAGTCCAATCACAACAGACTTGCCCATTTGACCAATTAGAGCAGAGTCACTGACCAGTCACAACAGACGGGCTCATTTGACCAGTCAGAACAGAGTAGGATCATCTGATCAATAACAGCAGACTAGATCTTCTGACCAATCAGGGCAGAGAGGGGTTATCTGACCAATCACAACAGACTGAACCATCTGACCAATAACATCAGACTGCCATATAAGACCTATCAGAGCAGAGTAAAGTCATCTGACTAATTACAACTGCCTGGCCCATCGGACCAACCAGAGCAGATTAGACCAGTCACCAAATGACTAATCACAACTGACTGGACCATCTGACCAACCACAACAGACTGACCAAGTTGACCAATCAGAGCAGAGTATTGTCATCTGCCTAATCACAACTGACTGGATCATCTGACTAATCACAGCAGACTGGCCCACTTGACCAATCAGAACAGAGACGAGTCATCCGCCTAATCACAACTGACTGGACCATCTGACCGATCACAGCAGACTGGCCCATTTGACCAATCAGAACAGAGAAGAGTCATCTGACCAATCATAACAGACTGACCAAGTTGACCAATCAGAGCAGAGTATTGTCATCTGTCCAATCACAAATGACTGGATCATCTGACTAATCACAGCAAACTGGCCCATTTGACCAATCAGAACAGAGAAGAGTCATCCGCCTAATCACAACTGACTGGACCATTTGACCAATCACAACAGACTGACCCATTTGACCAATCAGAACAGAGAAGAGTCATCCGCCTAATCACAACTGACTGGATCATCTGACCAATCACAGCATCTGACCAATCACTGCTGTGATTTGACCAATCAGAACAGAGAAGAGTCATCTGCCTAATCACAACATACTAGACCATCTGATCAACCACAACAAAATGACCGAGTTGACCAATCAGAGCAGAGTATTGTCATCTGTCCAATCACAAATGACTGGATCATCTGACTAATCACAGCAAACTGGCCCACTTGACCAATCAGAACAGAGAAGAGTCATCCGTCTAATCACAACTGACTGGACCATCTGACCAATCACAGCAGACTGGCCCATTTAACCAATCAGAACAGAGAAGAGTCATCTGACCAATCATAACAGACTGACCAAGTTGACCAATCAGAGCAGAGTGTAGTCATCTGTACAGTCACAACTGAATAGATCATCTGACCAATCACAGCAGACTGAAACACTTGACCAGTCAGAACAAAGTACAGTAATCTGACCAATCACAACAGACGGGATCATCTGACCAATAACGATTAATCTGGTTAATAAAGTAATCTGGCAAAAAAAGTAATCAAATTAATCAGAGCAGAGTATAGTCACTTGACCAATCACAACAGACTGGTCATCTGACCAATCAGACAAGAGTAGATTTGTCCAATTAGAACAAAATAGAGTAATCCGACCAATAATAACAGAGCAAGCTTTCAGAAAGGTGGGGTTTAGAAAGACCAGATGCTTCAACCAACCATTTTAGACATTGAGAGAAGAGCTGAAACTGCTGTGGATAAAGGGGAATTTTTTATTTATTTTTTACGTTGATGTAAACGTATTATATAAGACTCTGAATTAAAATGAGTATACTTTAAATACAAAACATTTTATTCTGATGCTAAAATGTGTGCAG
Seq C2 exon
GTCTGATAATGTCCAGTGGTCACATGTGGCGTCAGCAGAGGCGTTTTGCTCTGGCAACATTGAAATACTTCGGTGTGGGGAAGAAAACTCTAGAAAACGCCATCCTGCAGGAGTGTCGCTTTCTCTGTGACTCCTTACAGGCTGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013524:ENSDART00000035654:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]