DreINT0054268 @ danRer10
Intron Retention
Gene
ENSDARG00000042978 | cyp2p6
Description
cytochrome P450, family 2, subfamily P, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-790]
Coordinates
chr20:25664015-25664787:+
Coord C1 exon
chr20:25664015-25664316
Coord A exon
chr20:25664317-25664624
Coord C2 exon
chr20:25664625-25664787
Length
308 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATCTAATGCATATTTTAAAGCTT
3' ss Score
4.36
Exon sequences
Seq C1 exon
GTATGGTTGGACTTTATATCGGCAGGTCGTGTAAACACCCTCGACTTGTAATTCGCGTTATTACTTTAATTCAGACATTAAATCTTCCCAACAGACCAAACATAACCGTCATGGACCTGTTGCACATTTACGAGTGGATCGACATCAAAGCTGTATTGTTTTTTGCCTGTGTGTTTTTATTACTGAGTAACTATATCCAAAATAAAACACCGAAAAACTTTCCTCCTGGACCATGGCCTTTACCTATCATTGGAAACCTTTATCACATCGATTTCAATAAGATTCATCTTGAAGTGGAAAAG
Seq A exon
GTAAAAGCAGTCTTTATCTTTGTTGATGTTTGGCATGTTCTGAGTACGTTACGTTATTTTATCCCATGCGGAACATTTATATAGAAGTACAGCTAATACATTTGAAATATGTGCATTTATGAAATACCAATGCTTAAATTTAGGCATATAATTTGTTGCATAAGCTAGGATGGATATCTTTAAAAAAATGTGAAATGCAAACATGAACTTAAATTTGTGTCGTTTTGTATACTGTCGTATAAGCTTTTTTGAAGATTACAAAAGTTCAGCAGTCTTTGAACTACGTACATCTAATGCATATTTTAAAG
Seq C2 exon
CTTTCAGAAAAATACGGAAGCGTTGTAAGCGTTCATCTTTTCGGACAAAGAACTGTTATTCTGAACGGGTACAAACAAGTGAAGGAGGTGTATATACAACAAGGCGACAACGTGGCTGATCGACCTGAGTTACCTATGATTCACGACATAGCCGGAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042978:ENSDART00000063100:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=26.0)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATGGACCTGTTGCACAT
R:
TGTCTCCGGCTATGTCGTGAA
Band lengths:
356-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]