DreINT0054273 @ danRer10
Intron Retention
Gene
ENSDARG00000042980 | cyp2p7
Description
cytochrome P450, family 2, subfamily P, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-041001-155]
Coordinates
chr20:25669604-25671596:+
Coord C1 exon
chr20:25669604-25669890
Coord A exon
chr20:25669891-25671433
Coord C2 exon
chr20:25671434-25671596
Length
1543 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTCAATCTTTATTTTGCAGTTT
3' ss Score
8.8
Exon sequences
Seq C1 exon
GAACTGTGCCACAACTGCATTGCAAAACAGTCCAAGGAAAGGAGTCCTTTCGAGTTAAAGCGCTGTACAGATCGTAAACCTGACTGAAGTTCATCATGGACGTGTTGCAGTTCTACAAGTGGCTTGACATCAAGACTGTTTTGGTATTTTTAGTTGTGTTTTTATTTTTGAGTGATTATATCAGAAATAAATCGCCGAAAAACTTTCCTCCTGGACCCTGGTCTTTGCCGTTTATTGGACACATTCATCATATCGAGCACAAGAAGGTTCATCTTCAGTTTTTAAAG
Seq A exon
GTAAATTGTTATACATCTTTACTTTAAACGCGTAAGTTATATATTGTATTTGTAGTTAAACTACAGTAGCTGACTTTTAATTGTTGAGGGTTGGAAGTCTGGATAATTTACAGCTAAAGAGCGCGAAGAGGTCAAAATTACGATTATTTAAAAGACAAATGGTTTACTGTTAGTTGAAAGGTGTTTTGGGCATGTTTTAGCTGGTCAGACCAATTATTACTAGAAGCACATTTAGCATGAACAACATCGCGCTCGCACACACAAAATCTCTGTTATTTAATTCAATCTGTGTATAATGTTTATAGTACATCTATCTGTAAATATTACCCATAGTTTTTCTCTAATTGCACTTTATAAATTATACCTATATCCACTTTAACTCCGCGACTTTCGCTTTAAGATTTAAAGGGCTAGCATTGCACCAGACCCCTAAGTGTTTTCGTTTAAGTGTAGAAGATATTTTATGCACATAGGCTATGGATCATTTTGGTTTTTATTCGACTGTACAAAAGTTATTTACACTTAAATACACAGTATTTTGGAAACCCAAGCTGGGTATTGAACATTGGTTTGTTTTCATATTTTTCATATGGTTCATATGACAGCTGTACAAGTTATAGCTCAAATATAAGCTCTTGCCGGTGCTCATACAGTTCTAGCTTTCTTTTTACTGAATTATATTCACATATCAAACACTTGCCAAATGAATTGTGGTGTTTCCATGGCGCAGAAGTGAAAACAATACATTTATGATCAATAAGCAGCCCCAGATAGCACAGACAGCTGTCATCTCTTACCTTATGCTGTGTGCTTCAGGGCCATTTCTCCTCTGTTTTTGAGGTGATGTGCATAAGTAGTCCTTTATATGTCTGATGTGGTCCAAACACAGTGAATTAAGTTTGATCAAATGTAAGAATAGTGAAATATGAAGACAATGATCGATCCCTGTGGCCTGTATAGCACCTCTCATCAGTTAGAATACAATAACTTTTGCATAGATAATGGTGGAGACTATTTTTCCCCCCTATGATTACAGACATGTGCAGGAACCACCAAAATTAATTACAGCAACCTAGACCACACAGAACCTAAAAGGTACACTTTCAAATTTGAGTTTATAAAAAATACAAAAAGCGCCTCTTTTTTTAGGTGTTTATTATAACACAGACGACATATACAGATATTTTAAACACTTTCAATAGTGTTTTATGAAAGTTCAAAGGGTTTTCTTTAAATGATACCAAATTTTTGCATTTACACCTCTGCATGTGGATTTGGAAAGCTTTTAAATTTGGGAAGGCAAAATCCAGGTGGAAATCCAAAAACAACACTGGGGTTTAATATATATTTTATATTGCATTATGTTTAAATAATATTGCTATTGAGTTATTGACTATATAAGTTATTGACTGTATGAAAACATTGTGAACAGTTGGGACTTCATAAAGTTGAAAATATATGAAAGTGTGTGAACTAATAAATATGACTTTTTTAGCCTGCTATTTAATGCACCATTTCTTAATTTTCAATCTTTATTTTGCAG
Seq C2 exon
TTTGCTGAAAAATATGGCAAGATTTTCAGCATAAGACTTTTTGGACCAAGAATTGTAGTGTTGGATGGATATAAACTGGTAAAGGAGGTGTATTTGCAACAGGGTGACAATCTGGCTGATCGGCCCATTTTACCAATGTTTTATGACATCACTGAAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042980:ENSDART00000063107:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=40.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGTACAGATCGTAAACCT
R:
CGATCAGCCAGATTGTCACCC
Band lengths:
350-1893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]