DreINT0054284 @ danRer10
Intron Retention
Gene
ENSDARG00000022631 | cyp2p9
Description
cytochrome P450, family 2, subfamily P, polypeptide 9 [Source:ZFIN;Acc:ZDB-GENE-040120-2]
Coordinates
chr20:25684038-25684443:+
Coord C1 exon
chr20:25684038-25684179
Coord A exon
chr20:25684180-25684255
Coord C2 exon
chr20:25684256-25684443
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TGGTCTTTCTGTATCCTCAGCTA
3' ss Score
7.28
Exon sequences
Seq C1 exon
CTTAAAGATGACACAGCTGCAGGGTTTGATGTGGAGAACTTGTGCATCTGTACCCTGGATCTATTTGTAGCAGGAACTGAGACCACCTCCACCACTCTGTACTGGGGTCTTCTCTACATGATGAAGTATCCTGTGATTCAAG
Seq A exon
GTATATAAAGATACAGCCATTAACATAAACAGTAGTTCACACTTTCAGTATTCTTATGGTCTTTCTGTATCCTCAG
Seq C2 exon
CTAAAGTTCAGGAGGAGATTGATCGTGTTGTTGGAGGCTCAAGGCATCCATCTGTATCAGACAGAGACAACATGCCCTACACTAATGCTGTCATTCATGAGATACAGAGGATGGGAAATATTATCCCAATAAATGTGACCAGGACTACTTCAGAGGATATTCGGATAGGAAAATACTCTGTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022631:ENSDART00000030229:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAGCTGCAGGGTTTGAT
R:
GATGCCTTGAGCCTCCAACAA
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]