DreINT0054424 @ danRer10
Intron Retention
Gene
ENSDARG00000004964 | cyp4t8
Description
cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
Coordinates
chr16:4799573-4801016:-
Coord C1 exon
chr16:4800826-4801016
Coord A exon
chr16:4799707-4800825
Coord C2 exon
chr16:4799573-4799706
Length
1119 bp
Sequences
Splice sites
5' ss Seq
GTGGTACTG
5' ss Score
2.53
3' ss Seq
CCTCTCTACCCCTGTTTTAGGGA
3' ss Score
10.11
Exon sequences
Seq C1 exon
GACGAGCATCAGCAGGGTTTGTCAGACGAGGACATCAGAGCTGAAGTGGACACGTTCATGTTTGAGGGCCACGACACCACGGCTAGTGGAATATCCTGGATCTTCTATAATCTGGCTTGTAATCCCGAGCACCAGGAGAAATGCAGGCAGGAGATCCAGCAAGCTCTGGATGGAAAAGCCACGCTGGAGTG
Seq A exon
GTACTGTCATTACTCAAATTCATTCATTCATTTTCTTGTCGGCTGAGTCCCTTTATTAATCCGGGGTCGCCACAACGGAATGAACCGCCAACTTATCCAAGAAATGTTTTACACAGCCGATGCTCTTCCAGCTGCAACCCATCACTGGGAAACACCCATACACACTCATTCACACTCATATACGACGGACAATTTAGCCTACCCAATTCACCTGTACCGCATGTGTTTTGACCAACCCAAGCTCATTCTGGAAACGTAGCCCCGCGGACGTTTCTGGAGACCGCTATTTACGTGGCCGGAGGTACGTAAAGGCCGTGTTTGTTTTTTTTTGAGCGGACGCTGCGGGGCGGTGTGACGCCGCTCTGCTCCTCCTCTTCGCTCTCGCAGGCCGACGGCTCGCCTCCGAGTGGAGGGCTTTCCCGACGCAATCAGTTTGTCCGCTTAGCTCACAGCATTGCGTCGGCGGAGCGGAGGCCCCTGACGAGGAGGAGGAGGAGGAGCCGGCCGCGGTGGACGACGACTGGGATCGAGTCCGGGGAACAGCAGGTACCGGAAATCAGGTAAGACGAAAAACGGAACCCGAAAAATAAGGGCGAGAACGCGGCGGGATCCGAAAACGTGGTCGAAATCGAAGACGGGGGCTTTTGCTTTTTTTTTTTTTTTTTTCATCCGGCGGCTTTTCGCGCGAGAACAGCGCGGGCACGAACGGCGCGCGCTCCCGAGACGCGAAAAAGCGCGCACAGCGGCCAAAAAAACACTCGAATACGTACCTCCCGGGACGTAAATCGCGGTCCGCAGAACCGTCCGCGGGGCTACGTTTCCACAATGAGCCCGGGTTGGTTTTGACTTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCTCGCCAACACAGGGAGAACGTGCAAACTCCACACAGAAATGCCAACTGACTCAGCCGAGGCTCGAACTAGCAACCATTTTTCCCCTCCTTAAAAAGAGCGAAAGTGTATTTAGACACACTCTAAGTGCACTTAGCCATGTGCTGAGCTCTAGATGACACTACTACTAAATGCTTCACTTGGTAACACTGCAATTACAATATATTTATCTGAGATGTTGCCTCTCTACCCCTGTTTTAG
Seq C2 exon
GGAAGACCTGAATAAAATTCCATACACCACAATGTGCATTAAAGAATCACTGCGGCTTCATCCTCCTGTGCCAGGAATATCACGGAAGCTGACCAAACCCTTGACTTTCTTTGATGGACGAACTGTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004964:ENSDART00000131949:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCAGCAGGGTTTGTCAG
R:
TCAGGTACAGTTCGTCCATCA
Band lengths:
319-1438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]