MmuINT0045474 @ mm9
Intron Retention
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:114785411-114792234:-
Coord C1 exon
chr4:114792044-114792234
Coord A exon
chr4:114785545-114792043
Coord C2 exon
chr4:114785411-114785544
Length
6499 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TCCCTCCTTTGTCCTTACAGGGA
3' ss Score
12.44
Exon sequences
Seq C1 exon
GCTGAAGATGAACGAGCCTTCTCAGATGCTGACCTTCGGGCTGAGGTGAACACCTTCATGTGGGCAGGACATGATGCCTCTGCAGCTAGCATCTCCTGGCTCCTTTACTGCCTGGCTCTAAATCCCGAGCATCAGGACAGATGCCGGACAGAGATCAGGAGCATCCTGGGAGATGGGTCTTCCATCACCTG
Seq A exon
GTAAGATCCACAGCCCTGAGTATGTCATGTCACCCTGGATCTCTTCTCTGGATTTTGTTTATTTCTTACCCTGGTGCCTTAGTGACCACAGCGTCCCAAGGTATATGTATGTCAAAGCAGAGGAAGCAGACCACTTGTCTCTTCTTTCTGAAGAGAGCCTTGAGTTAACCCAACCATCTGCAAAAGAAGTTCACTATCCAGAAATCATCCATCACTAGGTTTTTTTCTACACAGTGTTGCACTTGTTTCTTTCACCCAAGCTCTGGTACATTTGAAGTGAGGAACTGACCTTAGGCTTGCACTTGGAGCCTCAAAGACAAGAATCTACAAGGACTCCTGTGCTGAGAAAGCTGGAGAAATAGTTCAACGTTAAGATGGCTATAGATGCCCTAGCCCATCACTTTGTCACTAGTGTAATATTTCAGGATAGGGTAGACTTTGGCCTTTGAACATATTAAATAGTATACTTAGTTATTATTGAGTTTTAGTAAATGTAGACTTCCAGGCAAGGTGGTGCATGCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGGGGATCTCTGTGAATTTGAGGTCAGTCTAGTCTACAAAGAAAATTCTACGACTGCCGGAATTGTTACATAGAAAAGCTCTGTCTTGAGGTGGGAGAGAGAAAAGGAAGACTGAGGGCATTTTAAAAACTGAGACACTAAAATAATGACGAAGATTTGTTACAGACCCTGTCCTCGGTAATCTGCAGTCTAAGGCAAGAGAGAGACCTTCATACTGTAAATTAAAGTACTGTGGTAAGGGCAACGACAGAGATTTGCTGACCACCAGATTTAGAAGACAGATTCCAACCCTGACCAAGGATGAGAGCCCCTGAGGATCTGACATGTCTAAGAGAGTAATCCAGGAGAAAGTCTCTACTCCACCTCACCAGACTTAATGTATCTTGCTGTTACTAAACTTTAGCTAATGGGCACGCCCCTCAGATACTCTGTTTGAAAGAAACAATAAATCCCTGAGAAGTCATCCCAACTACCCTAGTCAAAGAGAGAGAAGATAAGCATGCTAAAGACCACTGAGCTACATTTCCCAAGCAAAGATCAGCACGGAAAACAAAACTCCAAGTTCTAAAGGTAAACAAGATTTCACTTTAAAAGTAAGGAACCAAGAGTCGCTTCCTACCGTAAGTTCAAAGCTTCATCTAAGGAGGGAAGACTCTCCTTTCTCTGGGGAGACGGCTCGGCCACTGAAGCCCTTGGAGCGCAAGCATGGGGACCTGAGGGCCAGCAAGATAGCTCAGCCATAGAAGCCTGTTCTGAATCTAATCCCCAGAATCCAGAGAGAGAACTGACTCCACTCTACAAAGTTGCCTCCAAACCTCACATGTGGCCTGTGGCATATGCACTACATACATACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCATCTATATAGCATAAAATACAATGGTAATTAATGGCTTTTTACTGATTAAAAAATGTGCATGTTTGTTCGTATATATATAAATTTATAGTTTACAGTATGCTGTTTTGACCCATTTGTGCATTTTGAAATAACTAAACCAACAAGCATATCCATTAACTCTGCAACTATTTTTGTGGTGAGGGCATTTAAAATATACCCATTGAGCAATTTCTAAATGCACAACAAATTATTAACAACAGGTACAGCAATGTAGCTCCTCCATATCTAACTGAAATTCTGTGTCTCTTGTCAGTCACATGCCTGATCGATGCTAAGACTCAGCTCCTTTACAGCCACGTGTACCTGGGTGCACGGAGTGTTTGTCTATGTCTGGCTCGAGTTGCTTTGCATAATGTCCTCCAGGTTCATCGATGTGCTGTGTTTCTTTTCGCTGGCACACAGCATTGTGTTGTGTGTGTACCACATGTTCTCTATCCACTCCACTGATCATGACCCTCAGGCCGATTCTTATCTGGACTGTTGTGAATAAAGCTGCAGTTGATACAGTAACTTCACTGCCTTTAAATATATACTGACGAATGAAGTTCCTGGATCATGTGCCACTTCTTTTTATAAGTTTTTAGGCACTTCCATGCTGCTTTCCACGGGGTTGCACTGATTCATGTTAACATCAACCTTGTGCACAGATCCTACTTCCTCCAAACCCTCACGAACGTTTATCTCTCTTCTATCTAACATGTGTGAAGTGATTTCTCACTGTTGGCTTTAATTTTTATTTGTCTAATGATTTGGGATGTAGAGAATTTTTTCACATACCCACCAAGTGTTTGTAGGTCAGTTTTTGAGAAATTGCCTATATATTTTAATCAGTTTAAGTGTTTTCTTGAGTTATTGAAGTCTTTATATATTCTGAATATTAACTCCTTACCATACCTGTGGTTTGCAAATGTTTTCCCCGTTTTTTTTCACTTAATGTAAACTCATCTTTTATGTTTTTGTTGCTTATGCTTTCAAGAGAAGAGTTCAAAATATCTTTACAATGACCCATGTCAACAAGCATCTCTCAGTCTTTGGTTACTCTAGTAGTTTTACAATCAGATAGTATTTTTAAATCTTTATTCAATTCGGAGTTGAGTTTTGTATATAGGATAAGAATCTCATTTTATTCTTGATGTGTATATCTAGCTTTCTCAATATCGGTCACTGAACTGAATATTATATTTTCCCCATTGTGTGTTCTTGGCACCTTTGCTGAAGAGTCATTGTCCACAAGTATATGTGTAGGAATAAGTGTAGGTGCAGGTGCAGATGTAGGTACAGGTGTAGGTGCAGGTGTAGGTGCAGATGTAGGTGCAGGTGTAGGTGCAGGTGTAGGTGCAGGTGTAGGTGTAGGTGCAGGTGTAGGTGCAGATATAGGTATAGGTGCAGTTGCAGGTGCAGGTGTAGGTGTAGGTACAGGTGTAGGTGCAGATGTAGGTATAGGTGCAGGTATAGGTATAGGTGTAGGTGCAGGTGTAGGTACAGATGTAGGTATAGGTGCAGGTGTAGGTACATGTGTAGGTGCAGATGTAGGTATAGGTGCAGGTATAGGTGCAGGTGTAGGTGCAGGTGTAGGTGTAGGTGCAGATGTAGGTATAGGTGCAGGTGTAGGTGCAGGTGTAGTGCAGGTGTAGATGTAGGTGCAGGTGTAGGTGCAGATGTAGGTATAGGTGCAGTTGCAGGTGCAGGTGTAGGTGTAGGTACAGGTGTAGGTGCAGATGTAGGTATAGGTGCAGATATAGGTATAGGTGTAGGTGCAGGTGTAGGTGCAGATGTAGGTATAGGTGCAGGTGTAGGTACAGGTGTAGGTGCAGATGTAGGTATAGGTGCAGGTGTAGGTGCAGGTGTAGGTACAGATGTAGGTGCAGATATAGGTATAGGTGCAGGTATAGGTGCAGGTGTAGGTGCAGATGTAGGTGTAAGTGCAGGTGTAAGTGCATGTGCAGGTGCAGGTACAGGTGCAGGTACAGGTGTAGACGTAGAGTTCCAGTCTCTCCACCTGTTCCATTTGTTTTGTATTACCTCAGCTTAACAGTAGATGGCCGCCGGGTGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGTTACACAGAGAAACCCTGTCTCCAAAAACCAAAAACAAACAAACAAACAAACAAACAAAAACAGTAGATGGCCAGATCAAGCATTGTCTCTCACTTTGATCTGTGAAATCATTGTTGCTGAGGAGAGAGCAGTCCAAGTGGGGAGCCTTCTGTCCCATCATCTCACTGACTAGTCTGTTTTTATTTATTCACTAAACTTGGAAGACTGGTATGTCTGTTTCCAGCATGAATCCAATGCTTGATCTACTCTGTTGTAATTACTTAATAACAAATAAGGCGGGGAACAGTACTGCATGCCTTTAACGCCAGCAGGGTAGGCAGATCTTTGTGAGTATGAGATCACTATGATATACATGGTGAATGCCAGGACAGACAGAACTACATAGTGAGACTCTGTCTCAAAAAACAAAAGAGAAAAAGAAGAGAAGAGAAGAAAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAGAAAAAGAAAGGAGAGGAGAGAAGAGAAAAGGGAAGAGAGGGGAGGGGAGGGGAGAGGAGGGGAGGGAAGGGGAGGGGGAGGGGAGGGGAGGGGAGGGGAGGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGAAGAAACTTAATGTTGACTTTGCTTAGTCTCGATTGGTCTAAATTTGAAAACAGCCACGGAATCCTAGCCGGGTTGAGGGGGGAAACGTCCAGATGATCTGTTAACTATTCTCTCGTTTAAGGAAAGAGAGGGGGAAATACTACAAAAAAAAACCCACATGTCCAAAGATTTATTCTTCTATAATTATGTAAATATGTGTGTCTGTGTGGGGGGTTATGCACATGAGTGCAGGTGCTGTTGAGTCTAGAAGAAGGTGTCAGATCCTCTGGAGCTGAAGTGGTTGTAAGCCATCTGGCATGGGTGCTGGAAAATGAACACAAGTCCTTTGCAAGAGCAGCAAGCGCTCTTAACTGATGCATCATCTCCAGACAAGAGCAGGAAGCCCTCTTAACTGATGAACCATCTCCAGTCTCAGAACACATTTTGCTCAAAAACTCTATAATATACCTACTGTTTTCATTAATGAAATTTACATGTGGCATTCAGAAAACCTTAAGCAATTTCTTTGTCTCCTTGTCAGGTCACTTCTAGGTTGGTTTAAAATTTTTTTTTAATTTATTTATTATTTATTTTTATATGTAAGTACACTGTATCTGTCTTCAGACACACCAGGAGAGGACATCAGATCTCATTACAGATGGTTGTAAGCCACCATGCGGTTGCTGGAATTTGAACTCAGGACGTTCGGAAGAGCAGTCAGTGCTCTTAAACATTGAGCCATCTCTCCAGCCCCTTAAATTTCTTTTCTCAGGAAGTTGTATGTAAGTTCTGGGCCAGACTGTTCTATTCAGAGAGTTCCAGGCCATTGAGGACTACATAGTGAGAACCTGTCTCAAAACAACCACCAAAATTCTTCTTTGCTTTTGCATTGATATGGACAAAGTTGTTTTTCTCAATTATGTAAGTGGCAGAGTAGACACAATTGCCTTTTATTTCCTGGCCTTGGTGGGAAAAGAATACAGAACTTAAATTTTACATTTTTATAAGGCCAGCACCTACATTAATTTGTCAGAAAAGGAATGAGAAATGAGATTAGGCGAAATGGCCAAATGTATGTAGTCATTTCTTGATCTCATTTGACTTGCTATTATTCAAACAAACCCTTTCATCTTTTCCTGCTCTCACTTCAGACTTACTCTGTGGGAAGAGTTCTTTTCATCTCCAAGGCAAAATCTTACAGAGTCTCATAGAGCCCCGTCTACTTACATCACAAGCCACTCTTGAGCCAGTTACTAGCCTGTCTATCCAGGGCATCTCAAGTCATCATCCACTTGGAGCCTCTCCCTCCTTCCCACTTTGGCCCTGGAAACCAGTAGAGTGAGAAGGGTTTGTTGTTGGCTTATCTTATTGACTAACCAGCTTCTCCCTATCCTGAGGTTCTGACCCTGTCCGAAATTATTGAGTCCAGGACGAGAGGGAGAACAACTGGAATTACCATGTTCATGCCAAAGGTTTGCCAAATACCTCTGTATTCCTCCTTTCTCTCAACTGTTACATCTGCAAGCATATTGGGGACTTTTGTCCTGGAACTTTCTAGTAGTGACTCGTGAGGCAGGGGTACTTTGGATACAGTGCTTCTCCATCTGGTCTGCAGCTCTCCCTCCTCTGGTCAGTTCGCTGATTCACCAGACATCCTGTGCAGCGCCACCTTGCTTCTGCTACTCCTCCCTGCCAGTCTATCTGCCCTGAGCCACTTGTCATTCGTTCTGTGCTCCCCAAACTCCAGGGAGCACACGTCAGATCCTCTAAGTGACCCAAAGTAAGTCTCCTTTGTTTAAGATGAGTAACACTCCACTCCATTTTCCAAGGTATTTCAACATTTCAACAATTCTCTTTAAGTGATTTTTTTCTCTCTTAAACTTCTTTAGCCTCTTCTTCAGTCTTTAGCTGTTCCTTATACATTCTTGCTTTACATAAAGAACTAAGGGTTGTAACACTGTTTTTCAGAAATCTTGTCATTAAGCATCTGGTATCTGTGTGTCTATCACCTTTGGGACTTCAGTTGACATGGAAACAGGAAAGATTACACTTTAACATTGTGCTATACAAACCTAGACAAAAATTGCTTTATCCCAACAGTAATGCTTACCAGGAAAATAACTCAAATAGAGAACAACCAATGAAAAGTGGATTTAAAGTCTAAGTCACTTCCTCCCTCCTTTGTCCTTACAG
Seq C2 exon
GGAACAGCTGGATGAGATGTCATACACCACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCTGTCCCATCCATCTCCAGGGAGCTCAGCAAACCCCTTACCCTCCCAGATGGACACTCACTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155-Cyp4x1:NM_001003947:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
NA
C2:
PF0006717=p450=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: