GgaINT0035776 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22610692-22611357:+
Coord C1 exon
chr8:22610692-22610882
Coord A exon
chr8:22610883-22611223
Coord C2 exon
chr8:22611224-22611357
Length
341 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GAGCCCTGGTTTGCTTTCAGGGA
3' ss Score
7.03
Exon sequences
Seq C1 exon
GATGAGAATGGAGTTGGCCTGTCTGATGAGGACCTGCGTGCTGAGGTGGACACATTCATGTTTGAGGGGCACGACACCACAGCCAGCGGGATCTCATGGCTCCTGTACTGCATGGCATTGCACCCCAAGCACCAGGCACTGTGCAGGGAGGAGATCCAGGGGATCATGGGGAACCGGGATACCATTGAGTG
Seq A exon
GTGAGCTAGCAGTTCTGAGTTCTTTACCTGAAGCTTTTTTCAGAAGAGGTAATTGCCTTAAGTTGTGCCGGGGAAGGGGCTCAGCTTGGATATCAGGAATAAATTCATCTCCAGAAGAGCAGTGATGCAATGGCACAGCTGCCAAGGGAGGTGGTGGGGTCACCATCCCTGGAGGTGCTCCAGAACCATGGGGATGTGGCTCTGAGGGACATGGTCAGTGGGCATGGTGGGGACAGATCGGGCTGGATGACCTTAGACATCTTTTTTCAACATTAATGATTTAATATCTCATTTCCCCATTGCTGCCACCAAGCATAGCCTGAGCCCTGGTTTGCTTTCAG
Seq C2 exon
GGAGGACCTGGGGAAGATGACATACAGCACCATGTGCATCAAGGAGAGCTTGCGCCTGTTCCCACCCGTCCCTGCAGTGTCCCGAAGGCTCTCTAAACCTGTTACGTTTTCTGATGGGCGCAGCTTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAATGGAGTTGGCCTGT
R:
GTAAGCTGCGCCCATCAGAAA
Band lengths:
318-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]