HsaINT0044440 @ hg19
Intron Retention
Gene
ENSG00000162365 | CYP4A22
Description
cytochrome P450, family 4, subfamily A, polypeptide 22 [Source:HGNC Symbol;Acc:20575]
Coordinates
chr1:47610222-47610642:+
Coord C1 exon
chr1:47610222-47610412
Coord A exon
chr1:47610413-47610508
Coord C2 exon
chr1:47610509-47610642
Length
96 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCAGGATGGAATTGTTTCAGGAA
3' ss Score
3.22
Exon sequences
Seq C1 exon
ATGGAGAATGGGAGCATCTTGTCAGACAAGGACCTCCGTGCTGAGGTGGACACGTTCATGTTTGAGGGCCACGACACCACAGCCAGTGGGATCTCCTGGATCCTCTATGCTCTGGCCACACACCCCAAGCATCAGGAGAGGTGCCGGGAGGAGATCCATGGCCTCCTGGGTGATGGAGCCTCCATCACCTG
Seq A exon
GTGAGTGAGGGCTCAAAAGATGGGGTTCCCTGCCTTCTCCACAGGGGCCCCTGGTCTGCCCAGGCCTTGCTGGTGTTCAGGATGGAATTGTTTCAG
Seq C2 exon
GAACCACCTGGACCAGATGCCCTACACCACCATGTGCATTAAGGAGGCACTGAGGCTCTACCCACCGGTGCCAGGCATTGGAAGAGAGCTCAGCACTCCCGTCACCTTCCCTGATGGGCGCTCCTTGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162365-CYP4A22:NM_001010969:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.6=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGTTTGAGGGCCACGAC
R:
CACATGGTGGTGTAGGGCATC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)