DreINT0056560 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38812403-38812632:+
Coord C1 exon
chr7:38812403-38812480
Coord A exon
chr7:38812481-38812560
Coord C2 exon
chr7:38812561-38812632
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATGCGTGTTCCTCCCTTCAGTTA
3' ss Score
9.63
Exon sequences
Seq C1 exon
CAAAAGTCTGTTGCTCGGAAAAAGTGTGCGGCTTGCAAGATCGTAGTTCACTCTATCTGCATTGAACAGCTGGAGAAG
Seq A exon
GTGAGTGCAGTTTTTAATCCCACACAGGCAGAGACTTGATCTAACACTGCATCATAGACCATGCGTGTTCCTCCCTTCAG
Seq C2 exon
TTATTGGATTGGAATGCTCCACCTCAGGGGGAGGGGCTTGATGAGATGCCTCTCAAAGAGCCGTCATTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(46.3=100)
A:
NA
C2:
PF0013017=C1_1=PD(3.7=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGCTCGGAAAAAGTGTGC
R:
TCTGAATGACGGCTCTTTGAGA
Band lengths:
143-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]