DreINT0057153 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:609820-611413:-
Coord C1 exon
chr9:611290-611413
Coord A exon
chr9:609930-611289
Coord C2 exon
chr9:609820-609929
Length
1360 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GTGTGTGTGTGTGTTGTCAGGCT
3' ss Score
6.89
Exon sequences
Seq C1 exon
GATGCGGGCGGGCAGCAGGTGGGCTTTCTGCTGGGCAGCTGTGGGGTCACTCTGGCTCTGACCACTGACGCCTGCCAGAAGGGTTTGCCCAAAGCACAGACTGGGGAGGTGGTCACTTTTAAAG
Seq A exon
GTGGGCTGTTCACAACAAGGTCATCATGGTTTTGCATTTAAAGTCCTTAGTTGCATCCCAAATGGCACAGTGTACACTACGCACTCGTGTACTTGAACACTCAACTGTGTGGTGTGATCTAGAGTTTAGTGTCACCCCAAATGAAAAACTACAACAGATAAAACATTCCCCAGGCAGTGTGGGAAATTACTGAAATAAATTCATCACTAGCTCCTCCCCTTCATCAGTTGCCCCTCCTCCTCACAAATAGCTCCTCTCTTCCATCAGTAGATCCTCCTCTTCAACATTATCTCCTCCCCTTCATTAGCAGCTCCTCCCCTTCATCAGTAGCTCCTCCTCTTCAACATTATCTCCTCCCCTTCATTAGCAGCTCCTCCTCTTCATCAGTAGCTCCTCTGCTTAATCAGTATCTCCATCCTTTTATCAGTAGCTCCTCCCTTTCGTCCATAGCTCCTCCTCTTTATCGGCAGCTCCTCCTCTTCATCAGTAGCCCCTCCTCTTTATCAGTAGCTCCCCCTCTTCATCAATAGCTCCCCCTCTTCATCAATAGCTCCTCCTCTTCATCAATAGCGCCTCTTCTTCATCAGTAGCCCCTCCTCTTCATCAGTAGCCCCTCCTCTTTATCAGTAGCTCCCCCTCTTCATCAATAGCTCCTCCTCTTCATCAGTAGCGCCTCTTCTTCATCAGTAGCCCCTCCTCTTTATCACTAGCTCCTCCTCTTTATCAGTAGCTCCTCCTCTTCATCAGTAGCTCCTCCTCTTCATCAGTAGATCCTCCTCTTAATCAGTAGCTCCACCCCTTTATCAGTAGCACCTCCTCTTCATCAGTAGCTCCTCCTCTTAATCAGCTGCTCCATCTCTCTATCAGTAGCACCTCCTCTTCATCAGTAGCTCCTCCTCTTAATCAGTAGCTCCATCTCTCTATCAGTAGCACCTCCTCTTCATCAGTAGCTCCTCCTCTTAATCAGCTGCTCCATCTCTCTATCAGTAGCACTTCTTCTTCATCAATAGCTCTTTTCTTTATCAGTAGCTCCTCCTTTTAATTATTAGCTCCACCCCTTTACCAGTAGCACCTCCTCTTCATCAGTAGCTCCACCCCTTTACCAGTAGCACCTCTTCTTCATCAGTAGCTCCTCCTCTTCATCAGTAGCTCCACCCCTTTATCAGTAGCACCTCCTCTTCATCAGTAGCTCCACCCCTTTATCAGTAGCACCTCCTATTCATCAGTAGCTCCTCCTCTTAATCAGTGGCTCCACCCCTTCACCTGCAAAAATTTTGATGCAAGTTTTTGACCAATAGTTTTTCAGACTCTTTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCAG
Seq C2 exon
GCTGGCCTCGGCTGCTGTGGTTTGTTACTGATGGAAAACATGTTGTAAAGCCTCCTAAAGACTGGCATCCACCAATACGAGACGCCAGCAACGAGATCGCATACATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGGTGGGCTTTCTG
R:
TCTATGTATGCGATCTCGTTGCTG
Band lengths:
222-1582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]