RnoINT0047770 @ rn6
Intron Retention
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63708301-63708858:+
Coord C1 exon
chr17:63708301-63708424
Coord A exon
chr17:63708425-63708748
Coord C2 exon
chr17:63708749-63708858
Length
324 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
ATTTATGATTTATTTCCAAGGTT
3' ss Score
6.39
Exon sequences
Seq C1 exon
GATGCAGGGAGCCAACAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTAACTGTTGCCTTGACTAGTGATGCCTGTCACAAAGGACTGCCAAAAAGCCCAACAGGAGAGATCCCACAGTTCAAAG
Seq A exon
GTACGCCACAGAGCCTCTGGGAGAACACACTTCCTCTGTAGATCTTCCATTTTACAGACTGGTCCTATTGAGTTCAGGCCAGAGCTTTTCTGATCTGTCAACATTTCTGATAGTACAGGTAACTCATAGTCTGTGGGGTGACATGGTATAGCGTGTGGTGCCTCAACACTCTTGATGATAACTGTCAATTTTACATATGGGAACCAGAGGCTCCACGTAGTCTGAAGTGTTTGAGAGCAAGCTGTGAAATACTAGGTAAAGAGATTCTACAGCCCTGCTGTTTGGGTCCTATTTATTTAAAAGGATTTATGATTTATTTCCAAG
Seq C2 exon
GTTGGCCAAAGCTGCTATGGTTTGTCACAGAATCAAAACACCTCTCTAAACCTCCTCGGGATTGGTTTCCACACATCAAAGATGCTAATAACGACACAGCTTATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288:ENSRNOT00000020634:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGGAGCCAACAGATAGG
R:
CAATATAAGCTGTGTCGTTATTAGCA
Band lengths:
230-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]