MmuINT0049608 @ mm9
Intron Retention
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9567077-9567656:+
Coord C1 exon
chr13:9567077-9567200
Coord A exon
chr13:9567201-9567546
Coord C2 exon
chr13:9567547-9567656
Length
346 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
ATTTATGACTTATTTCCTAGGTT
3' ss Score
7.99
Exon sequences
Seq C1 exon
GATGCAGGGAGCCAACAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTAACTGTTGCCTTGACTAGTGATGCCTGTCACAAAGGACTGCCAAAAAGCCCAACAGGAGAGATCCCACAGTTCAAAG
Seq A exon
GTATGCCACAGAACCCCCAAGAACTTGCTTCCTATGTAGATCTTTCAGTTTACAGACTGGCCCTTCACTTGTTCAGAACTGTCCTATTGAGTCAGGACAGAACTTTTCTGATTTGTCATCATTTCTGATAATACAGGTAACTCATAATCTATGGGAGTAACATGATATGGCTGCTGGTGTCTCAAACATTCTTAGTGGTACTGTCAATTTTACATATGGGAATGCCAGAGATTACATGTAGACTGAAGTGCTTGAAACCAAGCTGTGAAGTAAAGGATGAAGAAATTCTACAGACTCATTTTAAGGGTCCCATTTACTTAAATGAAATTTATGACTTATTTCCTAG
Seq C2 exon
GTTGGCCAAAGCTGCTATGGTTTGTCACAGAATCAAAACACCTCTCTAAACCTCCTCGGGATTGGTTTCCACACATCAAAGATGCAAATAATGACACAGCTTATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-Dip2c:NM_001081426:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGGAGCCAACAGATAGG
R:
AGCTGTGTCATTATTTGCATCTT
Band lengths:
223-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: