HsaINT0048151 @ hg19
Intron Retention
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:436204-436803:-
Coord C1 exon
chr10:436680-436803
Coord A exon
chr10:436314-436679
Coord C2 exon
chr10:436204-436313
Length
366 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACTTGTTGTTTATTTCCAAGGTT
3' ss Score
7.19
Exon sequences
Seq C1 exon
GACGCAGGGAGCCAGCAGATAGGTTTCTTGCTTGGAAGCTGTGGAGTTACTGTAGCCTTGACTAGTGACGCCTGCCATAAAGGACTTCCAAAAAGCCCAACGGGAGAGATCCCACAGTTTAAAG
Seq A exon
GTAAGCCACCGAGCCTCCGAGAGCTCGCATGCCCACGTCCTTTGTCAGAAGACGGGTGCGGGAATACGTCACCCCGCCTCGGTTTCAATCCTCTGTGGAATGAAACGTCAGTCACAGACCCACGAGTTTTCACGCGTTCTCGTCCCTGATGACACAGCCGAGTTGCCAGCCCGTGGGGTGACGTGAGGTAACGCATGGTGGCGGCTTGGGTGCTCTTCTGTTGATGTCTTAGATCTCGTGAAGTCCGGAGACACCAGAGATTCGATCTAGTTGACGTGTTTGAAAGGGTACCACATAAATGGGGAGAAATTCTACAGACCGACTTTCAGAGTAACATTTAAAAGGAACTTGTTGTTTATTTCCAAG
Seq C2 exon
GTTGGCCAAAGCTGCTGTGGTTTGTCACAGAGTCTAAACATCTCTCCAAACCGCCCCGAGACTGGTTCCCACACATTAAAGATGCCAATAACGACACTGCGTATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-DIP2C:NM_014974:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGCCAGCAGATAGGTT
R:
CTCAATATACGCAGTGTCGTTATTGG
Band lengths:
230-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)