DreINT0057168 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:599651-600098:-
Coord C1 exon
chr9:600018-600098
Coord A exon
chr9:599775-600017
Coord C2 exon
chr9:599651-599774
Length
243 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
GTGTGTGTGTGTCTCTGCAGGGC
3' ss Score
12.14
Exon sequences
Seq C1 exon
TTTCTGTATCTTCAGGATGTCCTGCAGTGGAGAGCTCAGGCCACGCCAGATCACCCTCTGTTCCTGCTGCTCAACTCTAAG
Seq A exon
GTACAGCAAATTAATAAAGGGACCAAGCCGAAAAGAAAATGAATGAATGAAGACAACTCTTTAAGTTCATGCAGCTGGTGCGCAGACAGTTTTTCCCATCCTTAATATAGCTAAAGTGCATTCAGACATGTCCTTTTGCTCCATGCATTTTAGACTTTGCGCCTAGACTGTTAACATAGAGCCCTTTCAGTGGACAGGGTGTGTGTTTCTGTCCTCTCACCGTGTGTGTGTGTGTCTCTGCAG
Seq C2 exon
GGCACTGTGGTCAACACTGCGTCCTGTGTGCAGCTGCACAAGCGTGCGGAGCGTGTGGCGTTAGCGCTGATGGAGAGAGGACGACTGAACGCTGGAGATCACGTAGCACTGCTGTATCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(4.0=70.4)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGTCCTGCAGTGGAGAG
R:
GGAGGATACAGCAGTGCTACG
Band lengths:
190-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]