GgaINT0051030 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6916927-6919562:-
Coord C1 exon
chr7:6919482-6919562
Coord A exon
chr7:6917051-6919481
Coord C2 exon
chr7:6916927-6917050
Length
2431 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTGCCTCTGTTCCATGCAGGGC
3' ss Score
8.71
Exon sequences
Seq C1 exon
TTCCTGTATTTAGCAGATGTTCTTCAGTGGCGAGCTCAGACAACTCCAGATCATCCCCTCTTCCTGTTGTTAAATTCCAAG
Seq A exon
GTGAGTTGCAGGTTACATCTTAGTTTGAGATCAAGGTCAGCAAACTATTGTTTGGATTCTAAGAAAATAGCATCTAGAATTCTTTTTCCTAGAATGCTTTAAGTTATCTTGATGTGGGATGTCATGATTTTGAACATAAATCACTGCTACCTAGCAAGCGGCGTTAATTCTTCTACATCTGGAACTGTAGTCTGTATCTGGAATTCTATCATGCATTCTGCATTTCTAGCTTAAGAACATTGCAACAGTTGCTTTTCCCAATGAAAAGCAATTTCTGTCATATTAATGGAAGTCACAATCTGTCTTTGACACTGAGAATATTTAGTGTTTAGTTTTTTTGAGAGCTTTTGTAGTCCTTACAACTTATGACAAGGCAACAGTATTGTTTCTCAGCAGATAGGTTATATTCCCTTCTTGCCACTCTGTTCTGCACTTTGTGGTCAGTAGTTTTGGACATCCTTCTGCTTTTGTTCTGGCACACTCCTCCCTTCCTCCATTCTACCCTCCTTTCTTTCCAGGAGGCAAAGTTAGTCTCCAGAAGTCAATTTTGGTTTTAGCCTGTACTCACTAACTACACTTCCAGTGATAACAAGCCAGTGACACTAAGAGTGGCCTATACCAATCTACACTTATGGCTGTACTGTACCACAGTGAGATATCAAATGGGTTTTCAGAAGGTACAGCAGCAGTCCTGGAAAATAAGGGATTTGTTAAGTAAGATTTGGGAAGTAAGGTGTTTGACTGTGTCATTCATGCAAGCAGAATGGTTTAGGGCATGTTTTAGGGCTCTGACAAGTTTCTTGATTCATCTCCTTTAGCAGACGAAACTGCTTTTTTATGGTTAAATGCCATAGAATTGCTTTATATCTTTCAGGGCAAGGAGGGAAGTTTTCTAGTATGGAGAAGTCCCTTTCTAGGTCATTTTGTTCAGGCAAATTTTACCTCTAACAAGGGGACTGCAAAAAAAGCAATACAGAATTTAAGCACAAAGAAATTATGTCCTGGTGAACACATGCCTTGAATAGCTAAGACTAATAAGCCTGCAGTGCTAAACATCAGTGGTTTTACCAGTCTACATGAGAAACCCTTCAGTTTTATACTTTTTCATGTCAATATTTCTTTGCCATGTCCTTGAGTTGTTAGTGTGCCCATCTTAGCAACACACTTGCCTAAATTCACTGTTCTTATTGTGCATAACTTCAGCTCACAGTCTTGCTCTTTAACAAGTTTCCTTAGTAAAACTGAGCAGGGTGCCAGTACCATCCTACATCAGTCTAGGCTTTGGATTTGACAGCTTAGGCTGAAGCACCCTGTCTTGGACTTGAAACTGAATATTTATGCAGCAGATATTTGCTGTGGTAATCCTTGTCTGTGTGGTGGGAGGCTTGATTCAATCTGTGTTTTCTTCTCGTGTGGTTGTCCCACCACTTTTTCTCAAGTCAAAGTTTAGTCTCAGAAGCAGACATCTATCCTAACCTTACAGCTTCAAGGGTAAGGCGCCATTTCCTAGACTGAGTGGCAAAAGGATCTTTTCTGTCTTCATGAAAAAGCTGGATCAAGCCATTTGTAAACTCCATGACATTTTGGGAATGCCTCAGAAGAATTTAATTGCTTTTCATTTGAGGTTTTTGGCAAGTGCATACCTGTTGTCCTCTATGTTCTAGAAGCTCTGTGGTTAACCAAGATTTTGTGCTTGTTATTTATTTTGTTGTGAGTTTAGAGAAACCTTTAAGGTTGGTGGTCTAGTTAAGTTACATCAGAGCAGAAGTCTCTGGGCTCTGCTGTTCGCACAGTATCTGAATGCTTAATGTAGACATCGATTTGGACCAACGCCTCTGAAACTGATTGCATGGGCTCCTTTCTTCAGCCTCTTTTCCACACGATAGAACGATAATATTTACAGTCAGTACCAGTCTGCTAAGAAGGTAATAGGAGATGTGGAAACAGAATAAGAAGTTGTTGGATGAGGAGAAAACACCATAATCAGTGTAGCACCAACAGGTTGAAAAATGTTTGATCGGTAGCTTTCTCTAATCCATCCTCACACATTCTGAAATGAGACAAAGCTCACGCAGTTCTTCACTCACTGCTCAAACTTTATTAATGTTTTTTTCTTCCTTCGACTTTAAATTTTAAACATTTGCAAGGTGTTATTTTTTGTGATATCAGATAAATTTAAAAATTGCTTTGCTGTCTGATGTCAAAATAGTATGTGTAAAGTTCTCTAAAGTGTTAAAAGTTCACGTGACCAGCAGAATGTTTTGCAAAACACCAAGCATATTTTGACAGTCTTTAGATCTGTTTGCTGTGTTGTTAAAATAGCTGCAGTGAGAAGAAAATACAGTATCTGTAGCATGTACTTCATTCAGTTGAAAATGTTCCCCGCAAAGTTTTCTGGAGAGTTTCCTGAAGTTGCCTCTGTTCCATGCAG
Seq C2 exon
GGCACTGTAGCTAGCGCTGCATCGTGCATGCAGTTGCACAAGAGAGCAGAGAGAGTGGCAGTTGCACTAATGGAGAAGGGACGACTGAATGTTGGTGACCATGTAGCCCTGGTTTATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(4.0=70.4)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]