RnoINT0047713 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13108386-13109824:+
Coord C1 exon
chr20:13108386-13108492
Coord A exon
chr20:13108493-13109700
Coord C2 exon
chr20:13109701-13109824
Length
1208 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACCTCGGTTCCTCCCCAGGGC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GTGCGAGGCTTCCTCTCTCTCTGCAGTTCCTGTTCCTGGCGGACGTGCTGCAGTGGAGGGCTCACACCACTCCCGACCACCCGCTGTTCTTGCTCCTGAATGCTAAG
Seq A exon
GTGAGCGGTGGACTTTCGGGGTCACTTCCGTGTCCTCCTTGTTTCTGTTGGGGGAATAGACTGCTGTTAGACTTCAGTCCCTTCTGGGGCACCGTCCTCTCTGCCTGTCAGTTGTCTTGTAGAGACCTGTGCTTTGAACAGTGGACACAAAGTTGTTGATGTGCATTTATCTGGAAAATTCTTAGCAGCTGTATTTTCTTATTACAAACTATATCTGTGTGAGTACCTTGCGTGAGCGTTTATGAAGTACAAGGAAATGTTTATATGGTAATAATTATACATTAGTCTTTGTATATTTCCTCACATCTTTGAAATGACAAACACTATTAGCTGTTCCAAACTGCTTCTCCTTTGGGACTGAAATTTTCTGTCATATTGTGTGAGCATCTGTTAATGCTCTACTCATACTGAGAATGCCTAGAATCAAAGGAGATTCTGTAACCCTCACAGCACAGGATTACAGAACCAAACACTGTGACAACCTGGCGTGATTCCCTGTCAGTTACACCAATCGTACTTTAAGATACCTTCATTTTTGTCACGTGGAGAGCAGGTTTCGTGATCTTAGAAAACGTAAATTCAGTCTTGGTACTCTCTGCTCATTCAGAGGCTTACTTTTTATTTATTTTTATCTGGGATGATCTTGCTGTGTATCCCAGGCTGGCCTTCAACTCTCCATCTTTCTTTCTCAGCCTCAAGGGCAGGCACAGGACTGTGTCTCCCTGCTCTGTGAACAATAGGAAACCTTCTCTGCTAAAGACTCAAGTTTCTCATGTGGGAGGCCATCTTGCTTCCTGGTGTATCTCAGTAAACACCCATATAAAACTGAATTCTAAGTCATACTAAACTGAATTCTAAGTCACGCTGGCGACAGACCGTGACTAACTGTCAACAAAGATGTAGTCGGCTTTGGAGAGGAGCCCAGAGCAGCAAAGAAGAGAGGACCTGAGGGCCATAGCCCCGTGCTGGCCAGGGACAAGAGGGCAGTGTCCTGCAGGCCCCAGTCAGAGGCCTGAGAGCCAGGTCTCAGGGAAGAGGTGTGAGTGAAGTGCGTCCCTTCCTAGGCTCCGATGGGGCCCTCAGAGGTTCCCAGCCCCTACTGGAAGCGTCTGGCCAAGCACAGGGCTGGTGTGCAGGGCAGATACTCCCCTGTCCGGAAGCGGGAAGCGTCAGCTCACTGATGACCTCTGACCTCGGTTCCTCCCCAG
Seq C2 exon
GGCACAGTCACCAGCACGGCAACCTGCATCCAGCTGCACAAAAGGGCTGAGAGAGTGGCTGCCGCGCTGATGGAGAAGGGCCGACTAGATGCTGGGGACCATGTGGCTTTGGTGTATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(4.0=52.8)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTTCCTCTCTCTCTGCA
R:
GGATACACCAAAGCCACATGGT
Band lengths:
222-1430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]