DreINT0057245 @ danRer10
Intron Retention
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27119165-27121694:+
Coord C1 exon
chr24:27119165-27119274
Coord A exon
chr24:27119275-27121563
Coord C2 exon
chr24:27121564-27121694
Length
2289 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGTTTTTGCATGTCGTCAGATG
3' ss Score
7.16
Exon sequences
Seq C1 exon
ATGATCTGCCAAAGAAGAAGCCTCCTCAGCTCTACAAACCCTCCAATCCAGACACGCTGGCTTACTTAGACTTCAGTGTCTCCACTACCGGGATGCTTGCAGGAGTAAAG
Seq A exon
GTGAGCGTTCGCTTTCTCATTTTGGGTGAAATGTGAAACCGCTGCTCTTTGCTTCCTCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAACCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATAGACAACAAATTAAAAGAATGCATTTGAAAAGAGAAAACTAACCCTTCTCAGTTCACAATCGTGGAGATCAGGTGTCATGCGCACAGAGGAACTTCTTCTTTTATTGTTTAGAGATGAAAACCAGGCAGCTGCTTTTCTGTCATCGGAGCCATGAATGATTTTTGTGGAGACCACCCAGTATTGTGTAGTTTCTCTATCCTTTGACTAAAAACTGATCTGTTCGGGCCTTCAGAAGCCTTATACACTTACATACTCTTTTATTTGGACTTTAACTCGACACTTACGCTCATCATTCATCAATCATCTCATTATGCATTTAATAAAGCACAATTAAGTGACATATGGTTGTTAATATTACAGTTTTTTACAATTGCTATGACACTTTTATCAATACATTTAACAAGTTTCCTAAACTCTTAACACAGTTAGCACAACATCCGTCTTCGTGGGCTATACAATTAACACATTTCTTGTTGTTTTGACAGAAAATGCATCCAGTTAACACAAATTTAAAATGCTTTAACTTCTTTTACACACAAGCACAACCAAGAACAAAACAATGTAATTTTACAGTCAAATTTACAAATGCTTTAACACAGTATTTCAGAACAGATAACACCATGTTCTAAACAGAAATTATATAGGATAAAGTCAAAAGGAACAGCTGTTCTAATTGTGAATTGAAACACAAGTTTATTCCCTGCATTTTATTCAATTGCCAATGAGAAACAGCATATTGCGGTTATATAAATAAATAAATAAATAAATGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATATATATATATATATATATATATATATATATATATATCTTTATTTATTTATACAACTGCAATATGCTGTTTCTCATTGGCAACTGAAAAAAAAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACAGCTGATTCCCATCTAGAAAGCACACTTATGTCTTGTTTTGGTTTTTCCAATCACATGATCATATGTTCTAATAGAGGACTCTTGAGGTATTTGAAAGGAACAGTGAGCGCATCAAAGAACTCTGTCACCAATACGTCCATGTAAGATTATGCAATACAGTCATTACTGTACTTTACACAGTGTGTTTTGCAGTAAACTACTCTTTAAACCTGGAGTTCATTAGTACATGCAGTACATATACAGTACAGCATTTGCATACACTGTGTCTAATTACTTTCAGAGAGTCATGAAGTTAGAGGCCAATCAAGTACCACATTAAATTTTCAATGTTGACAAGGCTGGGGATGTCGCCGTAGGAAAACCATAATAGGCCAAAGAGCCACAGTTACCGTGCCGGGCCACAGAAGATATCAAGTATAATGTGGATGAGAACATGTGGCAAAAGACCTGGCAGAATAGAAGATTACTTTGTTATTTTATTATAATTGTGGTGCTTTTTCTGTTTGCAGTGATGTCCTTCTGCAAAAAAAGTCTGTACTGCAGAAATTCTGTGTCTGTATTTTTTTTTACATAAACTGTAAATTTTATAAAGCAATTTTTTTTCTTCGTTTTGTATAGAATTTTTGCCGTAAACGAAAGAAAATGCATGCGTTTACTTAACCCAACAAAACAAAACTGTAACGAGACTTCAAATATAAGAGCAGAGCTGACACATAAACTAATGGAGTTTCTGTAATGTCAGCTGATGATAGTGTTTTTATTGTCAGTGTGTTCTGATTGACTGAATGTTTATGTTGGAAGAGAACATGTGTTAGTGTTTTGAACAATAATTTCATTTTGAAACATGATTGCAGTGTTTTGTTAGACATGGTGTAGTGTGTTCGTTTATTATTGTAATTTGAAAAGTAGTTTAGAGGTTTCGTTTATAATGTGTGATTTTGAGCATAAAATTAACTGTTTTGCCAGTTGTGTATTTTAGGTGTGTTGCTGCGTTAAGAATTTAGCAAACTTGTTAAATGTATTGAAAAAAGTGTCATAGCCATTGTAAAAAACTGTAATTTTGCTTGTGTTTTTGCATGTCGTCAG
Seq C2 exon
ATGTCCCACACAGCCACTAGTGCCTTTTGCCGCTCTATAAAGCTCCAGTGTGAGCTGTATCCCTCTCGGGAGGTGGCTATCTGCCTGGATCCATACTGTGGCCTCGGCTTCGTCCTCTGGTGCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154:ENSDART00000137212:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]