MmuINT0049629 @ mm10
Intron Retention
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9623958-9628103:+
Coord C1 exon
chr13:9623958-9624067
Coord A exon
chr13:9624068-9627972
Coord C2 exon
chr13:9627973-9628103
Length
3905 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTGCCTTTCTGTCTTTCAGATG
3' ss Score
13.12
Exon sequences
Seq C1 exon
ATGATTTGCCAAAGAAGCGGCCTGCCCAGATCTACAAACCTTCCAACCCTGACACACTGGCTTACCTTGACTTTAGCGTGTCCACAACCGGGATGCTAGCTGGTGTAAAG
Seq A exon
GTGAGAATAGGGGTGGGCGGGCCAGTGGTAGAAAACAGACAAGCCATGCACTGATTGTTCTTTTGTTGTCATGTGTGATTGTATTCCAGTGATGCATGGAGAGAGGTATATGAGTTTTATATGGGCCATAACATATATGACCTTTCAATATCTAAGAGCTAACTTGCAAATACTGTGGGGAAAGCTGGGGATATAGTTTACTCGTGCAGCCCTTGCCTAGCATGGTCATTGCCCTGGACTCCATCTTTAGTACTGGGAAATAAAACCAACAACAACAAAAAAACCACAGCAACAAAAACCTAACAACTTTTTTCATACTGCACAGTACAGTACTGTCTAGTACCCTGTGCTAGAATAGTACATACAATCAAAGTTGCTGCTATTCTGCATGTTTGCACTGTATTCTCTTACTTGTTAAACTTGAGCACAATCATAACCTGAAAGATGGCTTCTTGGTGACGCTACCATGAGCATTTTGCCTATCAAAGTATAGAACTACTGATGTCACTTAGAATCGGCATCATCACAGCTCAGATGTCAGGGTCCTGTGCTTCAGGGTCTAAAACCCCAGGAAGCCTATTCCTCTCCATCTCTGCCTCTGAGTCAGAATGGGACAGTTTGAGCTAGTTACCTATCACAAGTTAGAGTTCTCAGACTTAACCTCTCCCATAGGATTAGGGAAAGTACCCCAAATTAGCTAGAGTATTAAATAGTTTTTTTTTAAACTTCCTAAAAGAAATATTCTCAGAGCAAGATGAATTAAGTGCTGTCATCAGTAAGTTGACCTTCTTGCTGTGAGGACCAAAATAGAAACCCTCACTTCTGATTATTCTTGTGGAATATGGAGGTGGGAACTACAATATTGAATCTTAATTTTTATTAAAGTGCACCTACATGGAACGGATAGTATGATCTCTGTGTAATACTTCTTGTTGACTCAATTTATTTATGCACCATAGAAAAACTCAAAGAGATGGTTAATTATACTTTTAAAACTAAAACTCCTAAAATGTTTTCCCAATTTTTGATTATCTGTGTGATGAGTATGTGAAGAAAAGTATACTATGATATGAGTTAATGAAACCTCATATGTTTTAAGGGCTGAAAGGCACAGGAGAATAGGGGAGTTTGTCTGGCATGTGGTCTGCCTTATTGGTCCCATAGGATTGCTGGGAGGCCATTTTTTTTTCTGGAAGAAATCCTTGTTGGATTTTAGTTTTTAGGCAAAAACATTCAGTTGCATACCATGAGATTTAGAAGAGTCCATGGGTGTCTTCTCTGTAATTAGTGCTATGGGATATCAAGGTTCATGTAAAACACAAGGGTATGTTGTATTCTGGCTGTCTTACATTTCACCCACTTAACTGTGATGCTTTGACCTTTGAATGGTTCCTGTGCCTGGGGAATGGTTGTTTGCCTGGAGAGAGGACACACATTTAACATCAGCCAAAGCAAAACAGCACCAAAAGGCAAGGCTTCTTGGAACACACCATGTAGCATAACACGGCACAACCAAGATACGTAGTATATTGGCTTGAGGCTCTCATGAATGATGCACATGTATTTGGAGATCTACTTTTAGGGCCTCTCAGATTCCTTAATTGCATGATGATATTGGCAGGGCCCAAACTGGGGTGTGCTTAGAGATTGGAAGGTTTTGGGGTGGTTTTTGCCTTTTTTTTTAATAGTCATTTCTTTCTTAACCTGTTTTCCCTCTTGTCACTGTGTTGACTACTCTCAAAACCTAGCAGACCCCATAGCTGCCAGCCAAGGAGATATGAGCACCTTCTCTCTTCTCTCTTTATATTAATCATGTTTGACAAAGTACTAGCAGACCTTATAGCTACCTGTTATGTCTCAACTTTACACCATATAGTGAACTCTTGAGACCAGACTATACCCATTATTTTTAATATAGAGAGAGTCTCTCTGTATCTGAAACTGGCATAGAATTCACTGAGTGACTCAGGTTGCCTTCAAACTTGCAGTCATCCCGTGCCTTTAGGTTGTCAAGAGCTGAATAGCAATGTACTATACCTGGTTCCTCCTCCCATCTTCCTCTTCCTCATCCTCCCCCTCATTCTCCTCTTCCTCTTCTCCCCTCTACCTTCTCATCTTCCTCCTCTTCTCTTTTCCTCTCTCTTCTTCCTTCCTCATCCTTCTTCCTCCTCTTCCTCCCTCCTCTTCTTCCTCTTCCTTTCTCCTCCTTCTCTTCTTTCCTTCCTCTTCCTCCTCCTTCCTCCACCTCCCTTTTCCTCCTCCTCTTCCTTTTCTTCCTTCCTCTATTTTCTCCCTTCTTTTTCTTTCTCTTCTTTTTCTTCTTTTCTTCCTCCTCCTTTCTTCTTTCTTCTTCCTTTTTAATCCCTAGCTCTGAATACAGTGCTTGACAGAGCCCTTCCATGTTAGCATTTACAGAATGAGCAGCAGAGCTACTTTCTGGTTCTGCATGATGTCCTTCCCAGTGCAGTAGAGGTTACTTTGAACACTTACCTTGAATGCATGGTAGGGGGATTAACTATCATCCAAAGAGTGGTGGGACCTTAGAGGAACATGTGGTAAATATAGTTTCATTTCTCCATTAAGCAGGTACTGTGGATCTGAAAGTATAAGTGTGTGCATGTGTCTTACAATACATGCATATCTGTTTATATTTTGAATTCTAGAGTAACTTTTTGCAATCCTAGGGTGAATTCAGTGAAGAGTATCCATTACACAACCTATTCCTTAGCAGAACTTGTAACAGTGACCTGTCACTTGACAATGAAGAGACTCCCACCCTTCTTTCTTTTATCTCTTCTGCTGAAGTGTTGAATGCAAGAGTTGGATTTCCTTGCTTGTTTTCTTTACTGGTTCTCTTTGTAGATTAGCACTGTGGTAGTATGCTTAGTTTGTGACACATTTCACTTTTGACATATTTCAATCATATCTGATATAGCTCTCCTTGCTTCCTTGATACCCAGAAGTTTGTGTGGTTATCAAGTTCTCACAAAACAATGATCTTGTTAGATGTAATATGCAGTGTTTCAGAATCTGTCACCTTTCTTATAGTACAGGATTGGAACTTCACTGTTTTCTAAGCTAAGGAGAGACAGGATTTGACTGCCATTTTATTGTGGGATGGTCATATCTAGGAAGAACCTGAGGGTCAGCAGGAAGGTCAGCGTTTTACTTTAGGACTCACTCACATGATTTTCAGCATACTCTCACTTCTGAGCCACTGTTATCTAAACATGAGCATAGGATTCCATGCTTGTGGAGTATAGGCCCTTGTGTATCTAAGACAATTGCTGTACAGCTCCCTGAACCTCACAGAATAAGAATAAAGCCAAGTCTCTACTGCAGATCTGGGAATGACCTCTCATTCTTTCTTTACCTACCTGCAGGCACTCATGTGGACACAAGAATCTCTGTTTATATAATCTGCTTTTCAGATCCAAAGCATTATTAACCATTGCTCAAGTTATAAGGAGGGACTATCAAGAAGTTGAAAGTGTGGTTTATTTCTTCAAAATGGAAGACTTCATAGTGTAGTGAATCATAGATGCAATTCTCATAGCTCAGAAGATTGAAACAGGAGTGCTATGAATTAGAAGCCAGCTTAGGTTTTGTAGTAAGTTCCAGGCCACTGTGGGTGGCCCATGTGAGATCCTCCCTACTACTTACCCCTTACCCACCCAGCCTACTTCCTCCCTCAAAGAAAAATGAAAAAGGGAAGATTAATGAGAATATCAGCCTTTCTAGGATAATGTGACCCAGACATACTATAGTTGACTCTGACCCTAAAAGTATCTTTGAGGCACTTAGTAAGAATTACCATGAGTTAACACTGGCATGTTGTCCCACAAATGTCGTTGGATGCTCAGTGTCCATTCACTTATTTTTTTTACTGCCTTTCTGTCTTTCAG
Seq C2 exon
ATGTCTCATGCAGCCACCAGTGCCTTTTGCCGTTCTATTAAGCTGCAGTGCGAGCTTTACCCTTCTAGAGAAGTGGCCATCTGCTTGGACCCTTACTGTGGACTTGGGTTTGTCCTCTGGTGTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264:ENSMUST00000174552:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types