GgaINT0100248 @ galGal3
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9906025-9909007:-
Coord C1 exon
chr2:9908898-9909007
Coord A exon
chr2:9906156-9908897
Coord C2 exon
chr2:9906025-9906155
Length
2742 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ACTTTGCTGTTGTCTTTCAGATG
3' ss Score
11.93
Exon sequences
Seq C1 exon
ATGACTTGCCAAAGAAACGGCCTGCACAGATCTACAAACCTTCAAACCCTGAAACACTTGCTTACCTAGACTTCAGTGTCTCCACAACTGGAATGCTAGCAGGGGTAAAG
Seq A exon
GTAGGAGCTTCTTTTAACAGTTGGCATTCCTGTTCCCGTGCCTGGCTGGCAGGTAGTACGTTGCTGCATATTTGTAAATTCTATTGATTTTTGGTAATAGAAGTTGAATTGCTTCCTCCCTTACAGTCATTATTTGATTACTTTAAATTGGCTTTATTGGCTTTTCCATACTGCTGTTCAGTGTACAGGAAGTTTTTAGCTCTTCTCGTGCTCCAGCATGCCTGCAGATAGCCTAATAGCTCATCTGCCTGAAACATTCTTTAACAAGAGCATCTATTTGTTCTATTTTATGAAGGAAATGAAATTCAGTCATCCCTCTTCTAACTTGCTCTAGTGCCCATCTATTGTTTGTTCCTTGTTGCAGCCTTACTGCTGGCCATCAGTTTTAAATATTCTCTTCTTCATTTAATTATGGGAACTGTTACCTTTCTGATATATTTACCTCGTACAAGATTAATGTAATCAGCAAACAATGTGTTTATGTATTTGTTTGATAAGCTTTGGCATGCTGAGCTCTTTAGATCTCTATTCTGTCAATTCCTCCAACATCCAACACAGTTTATCAAAGCTGATTTTTCTGGCTTGTAACACATGTGTTATTCCAATGTTGGTTTCAGCAGTGCAGAGGTAAAATCCCTCTGGTATTATTATGTTACTTCCTTACTCCTATCTGTTGCATATCCAAGGGCTATGGTTACTTTGACATCAGAAACTGTAAGAAAACAAAACTATAAACAAAGAAAGCATTGTTTACCCAGTTCTTAGATGGAAAATTTGAAGCACAAAGTGAAGTGACCTGCCCAAGGTTGACTAATGGCTAAAATGGCTGAGCTGGATTATGGTTATGTATCAGACACTCCCAGAAGATTGGTCTCATCTAACTTGAGATGATGAGCTACCATACCTACTAGACATGGACAAGTAATTGGGCTCCTCGATAGTCAACCGACAGAAGCAGAGACTTTCAGAGTGTAATTCCTCTGGTTTATTTGAAACATCTATTTTTGAATGGAGGTGAATGTCATTTAAGTCTTCATTTCCTCAACAGGGAGTCTTAAATGATCCTTTGATACATACTCATCTATATTAAATCAGATCTGAATTCCACCTTATCAGACCTGTAGAACTGACTACTACTTATGCAAAGTCAATATTGGGAGAGCTTTAAAGATAGTTAAGGCCAGGGCAAGGTGAAGAATTTAATGTGCCTAAAAGGAAATACAGATAAATATCTAATGGAGTTCTTGATTAGCCCCAGATATCTGAGTCATAAACCCTCCAGATCGCTAATTCAGCAGGTTTATATAAATAGTGCTATCTACTAGGTCATTGCCAGTGATTAATTAATTATGGATGGATCACCAGAGGCCACAAGGCTTGTCATAATGCAGTGGTAATTAATCAAAGACAATGGCTAAACAATTTACATGGCTTCTGAAAAGCTGTTAGATGTTTTATAGTCACTTTGGAAGTACTAAATTCCACGTAGGTTTACTCTCAACTTTTTCCCTACCTTGAAACCAGTGAGGTGTAAAAAATCACAGAATAAGACCAGTTGTTGTCTTGCAGAACTCAGTTTAATCCTCTGTGGAAAAAAAATGATCTTGATTGAGCCAGAGAAGAGTTAATCTCTTCAAACTGCAGACATTCACGGTGTGGACACCTGTTTGGAGCTGGTCTTCATGCATCACTTGGAGCACATCCAGCTTCAGTTCTGGCACTCACAGACAGCAGAGAAAAAGTCACTTCTTGATTGACTTTATTCTATTTATTAAGGACCAAATAGATTTTACCTATCAGGTGCTTGTTCTCCTCTGCTGACTGTAATAATGTTTAAGGAAAGTAGGCCAATACGTAGCAGAGATCAAAGGTTAGGTGAATTAAATCCTATCTGGGCTGTCCTTCTAACACAGGTGTGCTTCTGGTTACTAGCAGAGAGGACAAGGGTTAGAATAAGTTATCGTGTTCCCACTGTAGTTTGAACTTCTAAGCCAGAATGGGTGAGTCCGTGGGAAACATCCTAACACAGTTGTATTTAGGTGTTGTCGGTAAGGAGATTTAATATTACTAGAAAAAATGCATCAGAAAAATATCTTTTTGATGAGTGCTTTTGTTTCTTTTTTCCACTGGCTTTATCTCAGAGAGCTCTCAAGATTAAACAAAGAAACAAAAAGCCTGTTTCTCAGCCAGGAGCTGGTTAACAAAGACATCTAACAGAATGTTTACTGTCTATTGGAGAGTGCTGAATGATTTGCTTCTTACTACCATTTTGCATACAAAAACCTCTCTAATTTAAAAAGCGTATTGACAATATTCTGTCTTTATTGTATAAGTAAGTACGTTCTTTGAAATATATGACTGAAGATCAACAAAGTACTTCAAATTACATTCATGTCCTGCAGCCATTCATTCCTTTGTTCCTCCAGAAAGTTTAGCTCATTATCGTTAGGTTTGCATACAGCTTAGAGCACATCTTTGAACCACACACAGCTTTCTCCCTGAATCACTTCAAAATTATCATTCTTTCTGTCTCTCCATCACTTTCATGGTTATTTGGATATCCTCTTGAAGGAAAATTTGTTTTCTTAGTTATAAATTACATGTGTATTTACACTGAGCACAAAGTCAATATTTATCTGTTTTCTTCATCCTGTAACTGATTTAAACACTTGCCCCAGTTTGGGAATGAGTCTTCCGAATGATATAGTTGATCATTTTAATTACTTTGCTGTTGTCTTTCAG
Seq C2 exon
ATGTCTCATGCAGCCACTAGTGCCTTTTGTCGTTCTATTAAGCTGCAGTGTGAGCTTTATCCCTCCAGAGAAGTTGCTATCTGTCTGGATCCGTACTGTGGACTTGGGTTTGTCCTCTGGTGCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]