DreINT0058021 @ danRer10
Intron Retention
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19554374-19554780:-
Coord C1 exon
chr16:19554656-19554780
Coord A exon
chr16:19554570-19554655
Coord C2 exon
chr16:19554374-19554569
Length
86 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
AAAGTGAATTTGTATTATAGGAA
3' ss Score
5.88
Exon sequences
Seq C1 exon
AAAAAGAGGAACAAACTGCATTTGAACAAGAACATGCCTGCAATGACAGGGTCTCTGAAGTGGGCAAAAATGCTAAGAGACAGAATTCAAATCCCTTGGAACAATTTTCGATTTGTTCTAGATAT
Seq A exon
GTAAGTGTTTCAAAGATTTTATGATTTCATTATTTTCTTTTTTATTTTAATGGTGCAGGTCAATTGAAAGTGAATTTGTATTATAG
Seq C2 exon
GAAAATGGAAGGAGCAGAAATAGAGTTGGCTTTGCATAATTACCAGGAGATGTCCTCTCTTTTGGATGAGTATGAGAAGCAGGTCTATTTGAGATGGTGTGGTGATATTAACCATGTCTGCCAGATGAACCTCGACCAGCCCCTCATCAAAAGAGACCATACTACTGACCTGCTGTCGGTAAACGTCAATCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384:ENSDART00000148294:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.1=100)
A:
NA
C2:
PF083857=DHC_N1=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGGGTCTCTGAAGTGGG
R:
AGACCTGCTTCTCATACTCATCCA
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]