HsaINT1011320 @ hg38
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21588512-21589403:+
Coord C1 exon
chr7:21588512-21588636
Coord A exon
chr7:21588637-21589207
Coord C2 exon
chr7:21589208-21589403
Length
571 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GAAAAACCTTATTCCTACAGATT
3' ss Score
6.22
Exon sequences
Seq C1 exon
ATTGAATGTGGTCATGTAGTTCTTAACAAGAACATGCCATTTACCTCAGGAAATATGAAATGGGCCCAGCAGGTTCTCCAACGACTTCAAATGTTTTGGTCAAACTTCGCATCTCTCCGTTATCT
Seq A exon
GTAAGTAGTTAAGCTTAGGTCATGGCAAGTTATTCTAATGGTACGGGTGACATTTTATATAAGAGAGTGAGCTGTTCATATTAGCACTTAGGAAGCCATTGCCCTGTTCACTTCTCTCACTGGTTGGGTTTGTGGAGAGGGATTCATTCCCATGGTTTTGGAATATTTCTAATGGGACTCTTAGAATTTCATATGCTTACATGTTTTCTGGTCCTTTTTTTCTTTTTCCTTGTCCTTTCCACCCACCATGTTTGGAGTTTCTCGTTATTGTTTTTCCTTTTTCCAATAAATAACACTGCTTTTATAATGCAATCTTTGTACCTTTTTCTTCTCTTCCTAGGAGCCAGTAGCTTGTTGCTATCAACATTTAGTAAAATCTTGAGTTTCATTCATCTTATAACTTTATCTTTTAAAGCAAAAGCAATTAATACGCACATAATTTGGTCTTGACTGTTTCTCTTCCTGGTTGTTTATAGTGTATTATATTTTATATATTGTATTACTATACAATTATTAAGCGGAAATCTATCTAATATACGTATAAACCAGTAGAAAAACCTTATTCCTACAG
Seq C2 exon
ATTTTTGGGCAATCCTGATCACGCTTTAGTTTATCAAAAGTATGTTGAAATGACCACTTTGCTTGATCAATTTGAAAGTCGTATCTATAATGAATGGAAAAGTAATGTGGATGAAATCTGTGAATTCAATTTGAATCAACCCTTGGTTAAATTCAGTGCCATAAATGGTCTTCTCTGTGTCAATTTTGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877:ENST00000409508:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.1=100)
A:
NA
C2:
PF083857=DHC_N1=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTGGTCATGTAGTTCTTAACA
R:
TCAAAATTGACACAGAGAAGACCA
Band lengths:
312-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains