MmuINT0050649 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119379045-119380844:-
Coord C1 exon
chr12:119380720-119380844
Coord A exon
chr12:119379241-119380719
Coord C2 exon
chr12:119379045-119379240
Length
1479 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
GAGAAACCTTGTTGCTACAGATT
3' ss Score
4.87
Exon sequences
Seq C1 exon
ATTGAACACGGGCATGAAATTCTGAACAAGAATATGCCATTCACCTCTGGAAATATTAAGTGGGCCAGAATGCTCCTTGAACGCCTTCAAATGTTCTGGTCAAACTTTACATCTCTTCATTATCT
Seq A exon
GTGAGTAGTTAGCCTTACTCTGTGGTAAATTGTGCAGATATTATAGGTGTTTGAGTATCGAGACAGGATCTCTGCAGCCCACACGGTCCTCAAATGCGTTCATTAGGTAGCCAAGGATGACCTCAAAGTCCTGATTTTACTGCCTCCAGTTCTCAGATGCTAGAATCATAGGCAAGTATCACCATGCCTGGCTGACTTTCACACAAGGAAGTGGCTGTCAGTACTAAGCTTGAGGATTCATTGGCCTGCTCTGGTTTGGTTGGGTTTGATCTGGTGAGAAGGCTTTATCACAGGACTTTGGAAGATTTTATGGGACTAATAACTTCATTTTGTTTATACTATTTTCTGCTCCTTTTGTCTTTTAATGTCTCCTTTTCATTCATTGTCTGGAAAGTTTATTTTATTTCTTTCCATCGAGCTCTCCTACTTTGTCACACAGTCCTCCGTGCTCTTATTTAACTTCCTGCTAGAAACTGGTAACATGTTGACTCTTACTAATGTCTTAGGTCTTTGGGGCCTTTATATCCCATTTATAACTACTTTTTGTATATTTTCCTTTAATTTATTAATTTACTTTACATCCTGATTCCAGCCTTTCTTCCCCCAATTCCCCCCTCACACTTCCCTTTCCCAACTCCCCCCCTTTTACCTCAAAGAAGAGGACCCCCCCCCCATGGGTGACAACCCACTCTGGCACATCAAGTTGCAGCAGGACTAAGCACATTCTCTCCCATTGAGGCCAGACAAGGCAGTCCAGCTAGTGGCAAATAGATCCAAAGAGAGGCAACAGAGTAAGAGACAACCCGGCTCCAATTGTTAGGGGATTCACATGAAGACCAAGCTGCATATCTGCTATATATGTGTAAGGGACCTAGGTGTTTGGTTGGGAGTATAGTCTCTGCGAGCCCCCAAGGGCCCACCTTAGTTGACTATGTAGGTTTTCTTGTAGTGTCCTTGACCCCTCCAGCTTGTTCAATCCCTCTACTCATTCTTTCACAAGACTCCCCATACTTGGCCTAATGTTTAGCTATGTGTCTCTGCATCTGTTTCCATCAACTGTCAGATGAAGCCTCTCAGAAGACAGTTATGCTAGGTTCCTGTTTACAAGCATAGCAGAGTACCATTAATAGTGTCAGAGGTTGACTCACTACCATGGGATAGAACTCAAATTGGGCCAGTTGTTGGTTGGTCATCCCCTCAATTTCTGCTTCATCTTTATCCCTGTGCATCATGTAGGCAGGGCAGATTTGGGGTTGAAGGTTTTATGAGTGGGTTGATATCCCCCTCCCTTCACTGAAAGTCCCTCCTGGCTACAGGAGGTGGCCACAAATTGCCTCTAAGTAGATGCAATTTTAAAGCACTGTGTGGCTTTCATTGCTTCTCCCTCTGATCTTTATAATGTTCAATCCTGTTCTCTATTGTTAAATAAGCTGCACCCTGTGACATATGTAGAAAAGTAGAGAAACCTTGTTGCTACAG
Seq C2 exon
ATTTCCAGACAGTCCTGATGAGGCTGCAGTCTGTCAGAAGTATGCTGAAATGACCACTTTGCTGGATCAATTTGAAAGTCACATCTATAGTGAATGGAGAAGAAATGTGGACGAAACCTGTGAATTTAATCTGAATCAACCCTTGGTTAAATTCAGTCCCATAAACGGCCTTCTTAGTGTCAACTTTGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.1=100)
A:
NA
C2:
PF083857=DHC_N1=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACACGGGCATGAAATTCTGA
R:
AAAGTTGACACTAAGAAGGCCGT
Band lengths:
310-1789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: