DreINT0058027 @ danRer10
Intron Retention
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19549588-19550101:-
Coord C1 exon
chr16:19549932-19550101
Coord A exon
chr16:19549811-19549931
Coord C2 exon
chr16:19549588-19549810
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATTTGTTATCTGTTCTTCAGCAT
3' ss Score
7.26
Exon sequences
Seq C1 exon
ATGAATCATTACGAAGAAGTGCACAGAGAAGTCAGCCATTTGGAGGACTGGCAGGTTTTTGACGGTTGGTTTAGAGTGGATATCCGATCGTTCAAAATGAGTCTTTTAAACATTATCAAAAAATGGAGCTGGATGTTTAAGGAGCACCTGATGTCTTTTGTTACAAACAG
Seq A exon
GTGAGAGCCCCGTCCATAATTATGTAGAAAATAAATCACCCTAATTTTCCTCTAAACTTCAAACTCTTTCGTCAGTCAATAAAAGTAATCAGTTTCCGCTGATTTGTTATCTGTTCTTCAG
Seq C2 exon
CATTGGTGAGCTGGAGGAGTTCATGGAGCAGGCTGAATCCAGGCTTAAAGAGCCAGTGTGCAGTGGAGATTACCAGGCTCTTGTTGAGGTGAAGGGCTTCCTGCTGGCTATCAGAAACCGTCAGCATAATACAGAGCGGCTTTTTGAGCCTGTCCGTGAAATGGTCAATCTTCTGGAGCAGTTTGGAGAAACCTTACCTGACAGTATTTACATTCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384:ENSDART00000148294:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCAGGTTTTTGACGGTT
R:
CGGTTTCTGATAGCCAGCAGG
Band lengths:
244-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]