MmuINT0050655 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119364212-119365399:-
Coord C1 exon
chr12:119365230-119365399
Coord A exon
chr12:119364435-119365229
Coord C2 exon
chr12:119364212-119364434
Length
795 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
CGTGTACATTTTCATTACAGTCT
3' ss Score
6.31
Exon sequences
Seq C1 exon
ATTGACATTTACGAGGCTTTGTATATTCAGATGAGCAAGTTTGACGACTTCCGAGTATTTAACAGTTGGTTCAAGGTAGACATGAGACCTTTTAAGTTGAGCTTGCTCAACGTGATCAAGAAGTGGAGTTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
Seq A exon
GTAGCCTTGACCTCTGTGTTTGACATGGTACTAGCCCTTGACAAAGTTGGCTTGTGGGTTGTGAAAATGGCTCAGTCAGTGACCTTGTCATATAAGAATGAGAACCTGTGTTCACTCTCCTGTACCTATGTAAACACTGCATGTGGTGAAATATGCTTGTAACTCCAGAGGTGGAAAGGTGGAGACACATTCCCCAGGGTTTGCCAGCCAGCCAGCCAGTCAGCCATCCATAACCAGCATGCTCTAGGTTCAGTGAGAGACCCTGACTCAAAACCAAAATAAGTTGCGTAGAACCTAAAGAATGGTACCTGAAGTTGGCCTCTGCCTCCATATGTATACCCACAGCTGACTGATTTGTAGTTGACAAATTAATTCCAAGAGTATTTGTACTGCTAACATTAGAGTAGGTTTAACAAACAATGTTTATACATAATGAAAATAATATCCCATCAAGCCTTGTAATACTCATACATGAATGAACTTAAAATCCTTCTGTCTGGTGAAAGACAGCAAATATAGTAGGTCACATACAGTATTACTCCATTTATATAAAGTGTCATTACAAGCAAGCACAGAGACAGAGATTGGTAAGCAGTTGCCAGGGACTGGAGAATAGGTCTTAGCATGGTGTGGAGGAGGAACTGGGAAATGACATGAAGGGATGCTTATATCAGGTGATGGATAATTGCTCATTCTGTCTTCCTGTTATGAGGAACAGACCTGCTTCAAAATGTGTGATTAAGATGTTTTCATTAACCAAGCTTATGTCCATACACGTGTACATTTTCATTACAG
Seq C2 exon
TCTGAGTGAGCTGCAAGGATTCATCAAGCAGACAAATGCAGGACTTCAGAGACAGCTGTGTGAGGGCGATCATGATGGCTTAGTTGACATCATGGGTCACCTTCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAGCTCTTTGAACCTCTGAAAGAAACAATCATGCTTCTGGAAAGCTATGGGCAGAAAATGCCCGAGCAAGTCTATGCCCAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGTTTGACGACTTCCGA
R:
CAGCTGGGCATAGACTTGCTC
Band lengths:
357-1152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: