RnoINT0048645 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146040045-146041186:-
Coord C1 exon
chr6:146041017-146041186
Coord A exon
chr6:146040268-146041016
Coord C2 exon
chr6:146040045-146040267
Length
749 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
TGTCTATGCATTCATTACAGTCT
3' ss Score
6.82
Exon sequences
Seq C1 exon
ATCGACATTTATGAAGCTTTGTATGTTCAGATGAGCAAGTTTGATGACTTCCGAGTGTTTAACAGTTGGTTCAAGATAGACATGAGACCTTTCAAGTTGAGCATGCTCAACGTGATCAAGAAGTGGAGCTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
Seq A exon
GTAGCCTTGACTTCTGTGTTTGAAACGGTACAAGCCCTTGACATTGGGTTGTGAGGATGGCTCAGTCAGTAATGTTCTTGTCATATAAGTGTGAGGAACTGAGTACAATCCCCTATACCTGTGTAAACACTGGGTATGCTTGTAATCCCAAAGGTAGGAAGGTGGAGACAGAGTCCCTGGAGCTTGCCCATTAGCCAACCTAAACCAGCATGCTCCAGGTTCAATAAGAAACCCTGACTCAAAACCAAAGTATGTTGCATGGAACCAAAAGAATGACGCCTGAAGTTGGCCTCTGCCTTCCTATGTGTACCCACAGCTGACTGATTTATAGTTGACCAATTAATTTCAAGAGTATTTGTACTTCTAACGTTAGAGTAGGTTTAACAAATAATGTTTGTACATAATGGAAATAAGATCCCATCAAGCCTTGTAATACTCGTACACAAATGGACTTAAAACCCTTAAAGGTGGCAAAGGCAGTGGGTCACATAGAGCATTACTCCATTTCTATAAAGTGTCATCATAAGTAACCACAGAGACAGAGATCGGTAAGCAGTTGCCAAAACAGGTCTCAGCTGTAGTGTGGACGAGGAACGTCGGAAATGACATGAAGGGATGCTTACATCTGGTGATGGATACTCGCTCATTCTGTCTTCCTGCTAGGATGAACAGTCCTGCCTTGAAATGTGTGATTAAGATGTTTTCGTTAACCTAGCTTATGTCCATACATGTCTATGCATTCATTACAG
Seq C2 exon
TCTGAGTGAGCTGCAAGGATTCATCAAGCAGACAAACGCAGGACTTCAGAGACAGCCACATGAGGGTGATCACGATGGCTTAGTTGACATCATGGGTCACCTCCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAGCTCTTTGAACCTCTGAAGGAAACCATCATGCTTCTGGAAAGCTATGGCCAGAAGATGCCTGAGCAAGTCTATGCCCAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGTTTGATGACTTCCGAGT
R:
CAGCTGGGCATAGACTTGCTC
Band lengths:
357-1106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]