GgaINT0127347 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1036027-1038100:+
Coord C1 exon
chr18:1036027-1036451
Coord A exon
chr18:1036452-1037877
Coord C2 exon
chr18:1037878-1038100
Length
1426 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTGTGTTTATATTATATAGCTT
3' ss Score
6.33
Exon sequences
Seq C1 exon
GCTGACATGGAGGACATGGCTGACCTGGCTGACATGCGCCACGACCTGCTGGGCCGCGTGCAGGCTGTGATGGCGGCCTGTTGTGAATACCGCAGCAGCTTCGATCGCTACTCTTACCTCTATGGGGATGACCGAAAGGAATTCTTCCGCCAGTTCCTTCTCTATGGGCACATCCTCACCGCTGCAGAAGTCGAGGCTCATGCAGAGGATGGGGTCCCTGAGACATCCCCCACCCTTGAGCAGTTCAGGGAGCAGATTGACTCCTATGAGAAGATTTATGAGGAGGTGAATCGCATCGAGCCCATCAGCATCTTCCACAGCTGGATGAAGGTCGACGCGCGGCCTTTCAAGGCGTCCTTGCTGAATGTGGTGAAAAGGTGGAGTTTGTTGTTCAAGCAGCATCTCATTGACCACGTCACACACAG
Seq A exon
GTAAGAGCTGTTCCCCCTTCCTCTCTCCAGGATCTGCATTGACAAAAATGAGTTTTCTCTGGTCTTGACTGGACATTTAGCATTTAACAAATACAAGAGCCCTACTATATGCCAACTCTACCACGTGCCCTACAGCTTCCATCCCCAGGTCTCTGCTGGAAACACATACTGCTGAGTGGGTAAAGTGGAAACACCTATGTGGACTTAGTACTCTTAATGTCCTACATGCAGGTCCTTCCAGGACCTGCTGTGTGGCTTTAGGTAGGATGTCTGTTTGTCCGTTTGTCCTGATCCAACTATTCTGGCAGTCATGAGGAGGTAGCTTCAAGGTCACAAAAAGGGGGAGTTTTCCAAACAAGTTTTGAGGTCACGTTCTTCTTGCTCTGAGTAGCTGCCTGGTTACCAGCTTTGTGCAGGGTGATGCATCAGGTGATTTATTTGAGTAGTTACAACTGAAGGCTGTTGTAGGTCTTGGATACTTAAAAAGAAGTATTTGCAGACATTTGTAGCAGTGAAGACCATCCCATGTGGTGGATGGTGTGACCTCGTTGTGGTGGTTTCACCCTGATGGGCAGGTCAGCTTCACCACGCTGCCCTCTTACTCCCCTCCCTTGAATGAACAGGGAGAGAAAATATGATAGAAAAGGCTCAAGGGTTGAGGTAAGAACAGGGAGGTCGCTCCCAATTGCCATCATGGGCATGACTGCACAGGGGGATCTACTCTATGTGGTGCGCATGGGCTGCAGGGGGACAACCAGCTCCTCCATGAACTTCTCCTGTGCTGCAGGTTTCTTCTGCGCCATACCTGGAGCAACTCCTGCCCTCCTTCTGCACCGACCCTGGGGGCTGCAGGATTCTCTCTGTGCATTTTAACACTTCTCTCTCCTGGCTGCTGTTGTGTGGCAGTTTTTTCCCCTTTCTTCATTCTGCTCTCCCAGAGCACAGCCAGCATTACTCACTGCTCAGCGTGGGTCCCTTTTGGAGCAGCTGGTGCTGGCTCTTGTCTGACATGGGGCAGTCCCATCGCAGTCCCCTTGCTACCAAACCCTTGCCACATAAGCCTAATACATGTGTTCTTTTCAGGGCTGTGACTTTGATAGATAATTTCTATACGAAGAGCTTTTTGTATAGCTTTACAACTAGGCAGTTAGGGGCTCTCGCTTGAGAGTCCTTGACTCAGCAGTTTAGTCTTCATTAGGTGAAGAATTTAAGAACACATATTGGCCCAGCGACATCCACAGAATTTAAGCAGGTTCTTGACACTGTTCTGAGAACAGAAGTGTGGCTGTGCTGGAAAAGACCAAAGATCCTGGAGCCCATCGTGCCTCTGCTGACTGTGCCCATTAGCAGGCAAGATTAAGAACAAGGTAAAGCTAGGACAGAAGCTTCCCCCAAGTTCCCTTCACTGTGTGTTTATATTATATAG
Seq C2 exon
CTTGACTGACCTTGAAGAGTTCATAAAAACTGCTGATGAAGGTCTGAGCAAAAAAGTTGAAAAAGGAGATTATGATGGCTTGGTGGAGATTATGGGTCATCTCATGGCCGTTAAAGAAAGGCAGAGTGTCACTGATGCCATGTTTGAGCCCCTGAAGCAAACCGTGGAGCTGCTGAAGGCGTATGAGCAACAGCTGCCCGAGGAAGTCCATAAGCAACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTCGAGGCTCATGCAG
R:
ACGGCCATGAGATGACCCATA
Band lengths:
352-1778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]