Special

DreINT0058274 @ danRer10

Intron Retention

Gene
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:181338-182446:-
Coord C1 exon
chr12:182022-182446
Coord A exon
chr12:181561-182021
Coord C2 exon
chr12:181338-181560
Length
461 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
ATGTGTGATGTGTGTTTCAGTCT
3' ss Score
8.25
Exon sequences
Seq C1 exon
GATGATATGGAGGACATGGAGGAGCTGGTGCAGACCCGTCAGCATGTGATGCAGCGAGTGAAGAGGATCATGATGAAGTGCTGCGAGTACCGGAACTCTCTGGAGCGCTACGCTTACCTGTACGTGGACGACCGCAAAGAGTTCATGCGTCAGTTCCTGCTGTACGGCCATGTGCTGACGAGCCAGGAGATCGAGGAGCACGCTGAACACGGCGTCCCAGAATCCCCTCCGACTCTAGAGCGCTTCCGGCAGCAGGTAGACTCCTACGAGCGTCTGTATGAGGAGCTGCAGCGGATGGAGCCTGTGATGGTGTTCGAGCGCTGGATGAGGGTGGACGCTCGCGCCTTCAAGAGCGCGCTGCTCAACACCGTCAAGAAGTGGAGCTTGATGTTCAAACAGCACCTCATCGACCACGTCACTAACAG
Seq A exon
GTAGAACACTGTGGGCATAAGCGGAGCTCGTTTAAAGGGTTAGTTCACTCCAAAACTTTAAGATTCTGTCATTATTCAATTACTCTCCCTCTTGCTATTTCAATCTCCCGAGTGCATTGATCATGGAACTTTCTGGAATTTTGTTGAATATTAAAAGGTTTATTTCAGACATTAAAGGTCAGGGAATTTTAGGTTTGTGTTGTGCAAGTCTCAAGTGCTAACCCTGGGCACGTCTCAATTCTCAATGACAGAAGTGTACTTTTTTGGGTGAACTAACCCTTTAAAGGTCCAGAGAAGTTCTTTGAAATGTGCGTTTAATTATTGGATGTTTGGCGTAATCTGAACTGAAACATGAAGAGGAGGGTGAGGAAACAGTAGCCCCTCCCCTTTTTACAAAACAGCCAATAGCATGTTGTTCTGTCAATGCGAGTGGTTGGTGTGATGTGTGATGTGTGTTTCAG
Seq C2 exon
TCTGTCTGACCTGGAGGAGTTCATCCGGCTGACTGAGGCCGGTCTGGGGCAGAAGGTGGAGGAGGGTGACTATAGAGGACTGGTGGAGATCATGGGTTTCCTGATGGCGGTGAAGGAGAGACAGAGCAGCACGGATGAGATGTTTGAGCCTCTGCAGCAAACCATTGACCTGCTCAAGACTTACGAGCAGGAGCTGCCGGATGTAGTCTACAAACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.106 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACGCTTACCTGTACGTG
R:
CGGATGAACTCCTCCAGGTCA
Band lengths:
347-808
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]