DreINT0058167 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25178793-25180359:-
Coord C1 exon
chr9:25180013-25180359
Coord A exon
chr9:25178974-25180012
Coord C2 exon
chr9:25178793-25178973
Length
1039 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TGTATTTTTGTCTTTGACAGAGT
3' ss Score
8.69
Exon sequences
Seq C1 exon
GATATAACTCTAGTTAAAGCCATGAAAAATCCTCCAGCTGGTGTCAAACTGGTGATGGAAGCCATCTGCATTCTTAAAGGCATAAAACCAGACCGAATCCCAGACCCTTCAGGTTCCGGCAAGAAGGTTGAAGACTACTGGGGCCCAGCAAAGAAACTATTAGGAGATATGAAGTTTCTCCAGAGCCTTCATGAGTACAATAAAGACAATATTCCAGTCAGCTACATGAGCATTATTCGGAATAAATACATCACCAACCCAGACTTTGTTCCAGAGAAGATCCGCACGGCCTCCGCTGCTGCAGAGGGGCTCTGTAAATGGGTCTGTGCCATGGACTCTTATGATAA
Seq A exon
GTGAGTCTGAGTTAAGCTAAAGGTCAATGCAGAAAATTGGTTTTAAACCAATTACAACATTTACAAAACATTCAATCATATGGATTTTTATTAAAGGGGAGGTCCACTACGAACATCTTTAAATGTAATATTTTCGAAGTTCATTGCAAAGGGAGACATTGGCTTTTACAGAGTTAGCTTAGCAAAGCCTACAGTTAAAAAAGTTTGGGGACAAAAAAAACCATCCAGGCTAGTGAGATCACAATAGCTTCAGGTTACGTGCATTCACCACATGTATACACCCCGCACAGCAAATGTAGCAGAGAAAGCTAAAATGCCATCTAAATGTTACTATTTTCACAGAGCTTGGTCTGTTTTGTATTCGGTCTTCCAAATGATACAACACAGAAACAGAAGTGCTTAAAATTTAATTTTAATTATGTTTCAGAGAATTAAAAAATATATATAGCTAGCATTTGACAAAGGACAGCTCCAGAATCTCTCCTAGTTCTGTGATTTGACACTTGTCAGATTTTATTTTAGAGAGCAGGCATGAGGTTCAGCTGTGCCCTCTGTGTCATTTTCTGTCTAATTCAGGCACAAAACGATACCGCTAACAGCTACACTGGCTGACAGTGTTTACACAGCGCAAAAGCTCATGCTTGAAGGCGTGTGGCACTTTTCCTGGTGACGTGGAGCAGATCCGCGAATCACAGCACATTAAGTTAGCTGGCCAATCAGAGCCTCTTCGGGGCGAGTCTTTCATAACTAGGAACTAGGAAATATGACAGTTGTTTTCATGTGAGCTGAGCAGCTGTATATAATTAAAGTAAGACATATAAAAAATTATTTGATTTTTTACAAATGAAGCATGAACATACATTGCTTTGCATCTTATAAACACAACCACCCCTTTAATTAATTGGTATTTGTCCCTTAAAGTGTGAGAAATAATGTGAACTTAATTTAGAATTCAGGACATCATCAATTAACTCTGGATCTTATGTGGCTATCCAATAAATAAATTTATGGTGCAAAAATGTATTTTTGTCTTTGACAG
Seq C2 exon
AGTGGCAAAGGTAGTGGCCCCCAAAAAAGAAAAGTTGGCACATGCTGAAGAGAAGCTGAAGGTGGCCATGGAGAGCCTCCGGAAGAAACAGGCTGCTTTGAAGGAGGTCCAGGACAAACTGGCAAAACTGCAGGAGACCCTGGAAACCAACAAGAACAAAAAGGCTGACCTTGAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF127772=MT=FE(32.8=100)
A:
NA
C2:
PF127772=MT=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCGGCAAGAAGGTTGAA
R:
TCCTGGACCTCCTTCAAAGCA
Band lengths:
350-1389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]