RnoINT0049107 @ rn6
Intron Retention
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60195737-60197183:-
Coord C1 exon
chr9:60196837-60197183
Coord A exon
chr9:60195918-60196836
Coord C2 exon
chr9:60195737-60195917
Length
919 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCAACTTGATTATTTTGTAGAGT
3' ss Score
4.78
Exon sequences
Seq C1 exon
GATATCACCGTTGTGAAGTCCATGAAGAGTCCCCCTGCTGGCGTCAAGCTTGTCATGGAAGCTATCTGCATATTGAAAGGGATCAAAGCTGACAAAATCCCTGACCCAACAGGTTCCGGGAAGAAAATTGAGGATTTCTGGGGCCCTGCTAAGAGACTTCTTGGTGACATAAGATTTCTTCAGTCACTTCATGAGTACGACAAGGACAATATTCCTCCTGCTTATATGAATATCATAAGGAAGAGCTATATCCCCAACCCAGACTTCGTTCCAGAAAAGATTCGGAATGCTTCAACAGCTGCTGAAGGTCTCTGCAAGTGGGTCATCGCCATGGACTCCTATGACAA
Seq A exon
GTAAGTATAGAGAAGAGACCTGACTGGGGTGTTGGATTTGCCCTCCCACTCATATAGACAAGAGAAAGCTAGGAGCCCATGAAGGAAAAGAGGTTGTCAGAAAACACATCACAATTACTGCTTTTATTTTTACTAGAGCCCAAACTGTAGCAATTAAAAGTAATATGTGATTTAATGATCATTAAAGTTTCAGGAGTTAGGAATACTCCTTACTAAAAAATTTCTAAAGTCTCCCCAAAACTTTTGTTTATTTACTATGTTGAAAAATTAAATCGAAGAAGTACTAAACTTTTACTAAGTCACTTAAAAATATACAGAATTATGGCATGGTAGTAAAAATTGGCTCTCTTTATATCTTATAAGTGTAAATTTTATTTAAAATAGGGTAGAGGTTGATGTGCTGCTGCTGGGTGGTAGAGACCTTGCCTCGCATGTACGAGATTCTATTACCAACACCAGGACGTACAAATATTTGGGCTGGAGAGACAGCTCAGTCTGTGAAGTGCTTGTCTTACTGCACAAGGACCCATTTCAACCCACTGAACCACATAAGAGAAGTCAGGCATGGTGGCATTAACTTGAATCTCAGCACCAGTCAGGCACCGACAGGCGGAGCCTTGGAACTTGCTGGCCTACTACCATAGCCTACTCTACAAGTTCGAGGACAGCTTGAGGGACTCTGTCTCTGAGGGGTGACTGCTCCTTACCTGCTCTCTTACCCCGCCAAGTCCTCACGGTTGTTCTTCACACTTTGTATCAGATTTGATTCTTAGATGAAATGTGGACTCTACAATTAGGTGTAAATTCTGCAGAAAGGGGTGTCTTACTCCTTGCAAAGAGTATTTAGAAGGCAAATTTACATTACAAAGCTCCATATATGTTCAAAGGAATGTAATTTTCCAACTTGATTATTTTGTAG
Seq C2 exon
AGTGGCAAAAATTGTAGCTCCCAAAAAGATAAAGCTGGCTGCAGCTGAAGGGGAGCTGAGGATTGCTATGGAAGGCCTTAGAAAGAAGCAGGCTGCCCTGCGTGAGGTTCAGGACAAGCTGGCCAAGCTCCAAGACACACTTGAGTTGAATAAGCAGAAGAAAGCAGACTTGGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984:ENSRNOT00000092162:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(33.0=100)
A:
NA
C2:
PF127772=MT=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTGGGGCCCTGCTAAGA
R:
AAGTGTGTCTTGGAGCTTGGC
Band lengths:
356-1275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]