GgaINT0050160 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10699945-10701710:-
Coord C1 exon
chr7:10701364-10701710
Coord A exon
chr7:10700126-10701363
Coord C2 exon
chr7:10699945-10700125
Length
1238 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
GTGTCTTTGGCTTTGTTTAGAGT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GATATTACAGTGGTAAAGTCCATGAAGAGTCCTCCTGCTGGTGTCAAGCTTGTAATGGAAGCTATATGTATCCTTAAAGGTATCAAGGCAGATAGGATTCCTGATCCAACAGGTTCTGGAAGAAAAATTGAGGATTTCTGGGGTCCAGCCAAGAGACTTCTGGGTGACATAAGATTTCTTCAGTCTCTTCACGAATATGACAAGGATAACATTCCCCCGGCTTACATGGCTATCATAAGAAAACAGTATCTAACAAATCCTGAATTTGTACCAGATAAGATTCGAAATGCTTCCACAGCAGCAGAGGGTCTATGCAAATGGGTCATAGCCATGGATGTTTATGATAA
Seq A exon
GTAAGTACATATAATAGTTAAAATAAACTTTGTTGAAGAAATGAGTTTATTTTTACACTAAAAGAGATTTGATATTACTTCTTACCAATGCAATATTTGTGCAAATAAGCAGTCATGAAGATTCATTCACAGAAGATATCTGATGTTAAGGTATATATCCTGATTTTCAGTTCTAGATTTTTCTGAGAAGGCACAGGAGCAATATTTTATTCGGTTAGCAAATAAAGTTAACCTTTTTAGAGTGTTGCATAATGAACAGAGGTATTATTGAAATGTCTTTGGAACTTTCTGACCCGAGGATACCTTATGTCGCACATTGTTTTTGGTGCACTAAAAAAATATACATAGTTTTGATGATGTCTCCTACTTTGAAATATCTGTAACCCACATTTAACCGTAAATCACCACTGGGTGACTAAGGTCAATTTGAAATCTGAGTCATGGTAAGAGTAGCGCATGCCTTCATTAGAGAGAATGTTAGTCATTGACTAAAATATTAGGAAATGCATACTTGGTAGTGTTGCATTTGATAACAACTTCAAATGTTATGGTGACCTATTTTTTGAGAGAAAATTAACTACAAATGTGGACTTTGAAGAGAATATGCAACTTAGCAGTGAGAGAGGATTAAGTAATTTTGATGTTAATACTTGTGGAATAGTTTCATTTGATCTAGGGACGTTCTGGCACCTTGTCTTGCTATGTTTTTGGAAAGAGATACAGTGTATTTTCAATTTTGTGTTGCTTCCAATGTTCTCCTCATAGAAGTAATACAAATACTGGAATCTTCAAAACTGGAAAATACATCCTTGGATATGAAAAGCTATTAATTTTTTTGTAGGTTAGCTCTTTGCATGTGTACAGTGCATCTGTAACTTAATACAGTTATCTATGTGTTTCGAATGGCATAAATCCATCTGTAATGGATTCTAAGTGGTGATTAAATGAGACACAGCTCGGAAGGATAATCATTTTCACTTTAAGGCATTAGTTGTTACAGAAAGTTTTGCAGAAACTGCTGCAGTCAGTCAGTAGGAGCACCGGAATAAGTAATGATGTAAATGAAGTAAATACCAACTGTCTTCTTATACCATCAAATAGCGAGGAACAGAATGTTGCGTAACTGCTGAGCTGCTGACATTTCACTTTGTCTTTCCTGTGTTAGCTTCTTTTAACAGTAATTCTGGAATGAGGGTGTATTTTTCAGGTGTTAAAAAGGTGTCTTTGGCTTTGTTTAG
Seq C2 exon
AGTGATAAAAAATGTTGCACCCAAAAAGCTGAAGTTGAATGAAGCCGAAGGAGAATTAAAGATTGCTATGGATGGTCTAAGAAAGAAACAAGCTGACCTGAAAGAAATCCAGGATAAATTGGCTGTACTCCAGCAAACACTGGAATCCAAGAATCAGGAGAAGGCTGACTTAGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(32.8=100)
A:
NA
C2:
PF127772=MT=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGTCCTCCTGCTGGTG
R:
TTCAGCTTTTTGGGTGCAACA
Band lengths:
358-1596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]