DreINT0058169 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25174267-25176881:-
Coord C1 exon
chr9:25176696-25176881
Coord A exon
chr9:25174431-25176695
Coord C2 exon
chr9:25174267-25174430
Length
2265 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TCTGTTTCTGATTTCTACAGCGA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GTGGAGATGTGCAGTAAAAAGCTAGAGAGAGCAGAGCAGCTGATTGGTGGGTTAGGAGGAGAGAAGTCCCGCTGGAGTGAGACAGCATTTAACTTAGGTCAACTCTACAACAACCTTACTGGAGACATTCTCATCTCTGCTGCCATAGTGGCCTACCTGGGCGCTTTTACTTCCAGCTTTAGACAG
Seq A exon
GTATGCCAACACATACAAAAATGCTCTTCACCCAACAAGCCATCAATAAACATTGTTCATGTCTTTACAGATAATGTTGTCAAAGCATGTACACATGTGCATAACCAAACTGACAATATTTGCTATGCAATGACATAAACCAATTTCACTATTAAAGGTGCAGTATGTAAGTTTGACACCCAGTGCTTGCTATTACACACCTGGTTCAAAACATGCGCAAGTGCAGGTTGCCAGATTAACGACATCAACGGAAGTGTGCCAAACTACTGAGGGCAAAGGCTGATTTAAATCATGATCTAAATAAAAACAACGGCACGCGATAGAAGGAATATTTTTCATATAAAAAATACATTTTTGTTTTAACCAACACCTGAAATTTATATTTTAGAATTTTTTTGCAGCTGAACTACAAGATAAACTGACAATGTTTACCTCATGTAAACCTTGTGTGTTTTATTTAGTGTTAAATGCTAATAATGTGAGTTTGAATGCCATTTTACATGACATTTATTGTTATACTACTGAAAACAGCAGCAGTTAGTTCACCTCAGATCTTTATAATAAAATAAACCAATTGAAATTGAACTTTAAAACTGTGACTCCTGTGCAAACCAACACATATCAGTGATTCAGCATCTACATTTAATAATGTTAAAGATATTTAATATGTATTAATCAGATTATAAACCTTACCTTTTCATTGGAGTGCAGTAAACTCTAATTATATGCGTATCATTTCGGAGTCTGCTACTGTCCACCAGAGGTCGCATTTTAGTTATGGACACAGTTTGAGAGCCTTACTGAATGAATTTAATTTTCCACCAAGGCAACCCTGGCTGCTGAAATATAATAGTCCTAACTGTGGGCGGGTTAAATAGAACCAAAAGAAAGTGACTGTTTAAGCACGTACTGTAATGTGCATTTTCAAAGCATAATTAACTTACTTGTTTTTTAGATTAACACGAATGTTCACTTATTATATTTTCTAAATTTCTGCAAACATATCATTATATATTATTATTATTATTACTTATATTTTATTCGACCCAATATTTGAACATAACAACTAACTTAAATATAAATTAGGTGTTTATTAAGGCAAAATCGTAGTTAATGGTTTGTTAGTGCTTAGAAGTGTGACCTAAGAAAAACCTTTAAAAATATTTTCAAAGTGAGCTGTAGAGTCACTGAAATTTGTGAAATTCTCTTTGCACAATTTCCAAAAGTTTCATGTTGGTTATTTTCCACATTGACCAGCATGTCACTGTTTCTTGGTTGAAATTCTGTAAGTTCTGCTTCAGTAGTCACTAAATAGTAAAACAGTAAACAGTAGCCAATGTTTTTCTTCATAACTGTGGCATATTCATGTAACCACACCTTTATGGGTATTCTTCATTTGTGAGTTCTTTTTAGTTTGATGAAATCTGATCATTTACTGTAAGCAAGAAAATGACCAAGCCAACACTGCTATTACTATGAGTATGACATGCTATTTTCCAAATACAGCATGTAGCTAAATCTAGCAAAATCCTGGAGTTATTTTACAGCGTAGGAGTGAGTCTATTGAACAATGAGATACATCTGGGACAGGGTTCATCTGGCAGAAGCATATTTGTCTCTGACACATAACCTTGAGTCTTGTTTGAGTTTGACTGTAATGCCAGTAAAACTCCTATTCGTATGCAGCGCAGTTTATGTGTCTCAGGTGGAGTGATATTAAGGTGTTTTGATATCCTTTCTATAGGCATTATTTGTGCACATTTGCCCCCGTCAGCTGGTTACTCTTAACAACAGAGCAGAGTCCATAAAAAATGAATGAACTCAGTGAAAACACTTTTGTACAATATACCAGGGATTGCTGGGTTGAGTTTGAAACAGCACTCAGGGAACAGAGAGTAGTTTAACTTTAATATTTCCCTTCTGTGAAAGCAATATCTTTTCTCCCAACAGAGATTCTTTTTATATAAGCTTTTGTGCAGGTGCATGACACACAGCGTATTACCTTTGTGTGCTGTAAGTCGTTATTAGATTGAAACAGAAAACTGAGATATCAAAACGATAACAGTGCTGTCCGCAATATCATTATAAGGTTGGAACTAATAGATAAAGTTAAAACTATGGATCTGTGTTTTCAAATAACATTAAAAGTTCTTAGATGTAGAGTTATCAGTAGACTCAGTGATCAGTGGATGTTTCGGGATCAAACTGTCTAAAGCATGTGGTCGTGTTGTCTTTCCTGTGTGTCTCTGTTTCTGATTTCTACAG
Seq C2 exon
CGAGCTACAGAGGAGTGGATTGACATGTGTAAGTCAAGAGGAATTCCTTGCTCCAAGAACATGTCACTGATGAACTCACTGGGTGAGCCGGTAAAAATCCGCAGCTGGACCATTGCTGGACTTCCTTCAGACAGCTTCTCCATTGACAATGCAATCATTATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.4=100)
A:
NA
C2:
PF127772=MT=PD(2.3=14.5),PF127812=AAA_9=PU(12.2=50.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]