MmuINT0051086 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr1:46306618-46310378:+
Coord C1 exon
chr1:46306618-46306803
Coord A exon
chr1:46306804-46310214
Coord C2 exon
chr1:46310215-46310378
Length
3411 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCTGTGAATATTTTGAAGAAT
3' ss Score
4.69
Exon sequences
Seq C1 exon
GTTGACTTGTGCAGCAAAAAGCTAGAACGCGCAGAGCAGCTGATCGGGGGCCTGGGAGGTGAGAAAACCCGATGGAGCAACTCCGCGCTGGAGCTTGGGCATCTGTACATCAACCTGACGGGAGATATCCTCATCTCCTCAGGGGTTGTCGCCTACCTGGGAGCCTTTACATCTAACTACAGACAG
Seq A exon
GTGAGGGATGCCTTTGGGGCTTTTCTTTGCTTCCCCCCATCATTGCAACATTAACCTCTGGTCTGTTTGTTGCTTCTGCTGGTGGTGGTGTTGGTGGGGAACTTGAGGGATTTTTTTTCCATCTGTGTTATTTTGATTTTGTGTTAATTTTTGGTTACTGCAAGGAAAAGCAGAATAGTTTTAAATTATTTGTGCTCAAAAATTTTAGACATCATGTAAATTGCTTGTTAGCCAAAAGATCTGTGTGAAATATTGTTTTAAAATCTAAATTTAAACTGACTGACTTTAAATGAATTTTTAATTTTCCTAACTAAGGGTAAAGGAATCAGGAGTATGTGTGTGTGAGTACGTGTGTGTGCGTGTGTGTGTGCCTGCCTGCCTGAACACACGCGTGTATGAGAGCTCCATGCCTTAACTACTCTACATGGATCTTAATAAGTCATTCTAAAGCCACATTAGAGGCTGAAACTTTAGCGGGTTGTCTTTAGAGACAAGACAACCTTCACTGACCTTAATCAAGGGCTTCTTGGTTTCCCTTAACATACTTGCATATTTTGTCCACCGAGCCTCACTGAGGACTTTTCTGTAAGCAGAACTGAGCCCTCCATTTCCATTAAGGTTTCTTTGACTATTGAGGTTTTAAAAACAAACTTTTAAAAATCCTCATATAGATGGAGCTTCTATTTTAGCCTTTTCACGTTGGAGGCCTCTGTTTACCTTGTTAAGGTCATAGAAGTGCAATGACTCCAATTTTCAGCTCTGCCTGTTCTTTTGAGTTTTGTTCAGTAGGGGTATTAACATCATATATCTAGCTCAGGAGGTTAACATTTAACTTATCTGGTTAGTGATGGGTTAGTTCAATTGACAACTTTAAACAAGGAAACTTACAAAGCTTGAGACAATTCCCCAGGCAGAGCCATCAAGCCAGTCAGAAAGAGAGAGGGAGTAGGAACAAGAAACATGGTCACTTCACTCTGTCTTCCCACAGGGTCTTGGAACGATGGAAATACTAGCAGGCACTCACTCCCATCTCTGTTAGATTTAATCATACCCCTGGGCATCCCAGTGACCCCCATTGGGTACTTACCTGCTGTTTAGGCAGCTAGAAGTGCCAAACCACACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGTACCACATTACACCACACCTGATGCTTGGTTATTTTATGTTACTGAAACAGCCTCAAATATATCTTTAGAGAAAACACCAGGAAATGCTCAGAGGAAGATGGGAACGTGGGGAGCGGGGTTACAGATTAAAAATTCAGGGTAGAGTACTGCCAAATTGTGGGCAATTTCAACATCCCCCCAAATCATAGTAATATAACTTAGAGGATAAAATATGAAAAGATGAATTTATGACATGAACTAATACAAATGAGTATTTGACAAAAATCAGAGGCATTTCCCTCATCACCAGGGGTCTTCCACAAAGGACTGAAATGTTAACTACAAATGGACAGGATCAAGGAGCAAACTTTATTTCACAACTGCTGTCTTCAGTGTTCTCAATTATGGGTAAAGCATCCATGTTTTCCTGTGCAGTTTGCTGAGTCCTGAGCCAAGTCATTTCCCTTTTAGGCTCAAACACTCCTGCAGGACAATAGTCCTCGAATTATTCAGGTTTCCAAGGGAAACCTCTTGTTATCTCCATATGAATTATTCAGATGTGCAATTCCCAGGAAGTACCTGAAATTTAGTTCATAGCATCCCACTTATTGTATTATAAACTGTTGCTCCAACTGCAGCAACTCCTCCCAGTGAAAATCCTGTCACACACTCACAGCAATAAGGAAGTATGCTTCTCACTCACCCAGGTATATTTCTGTAACAGTCTGAGATCCAAAGGACCAATAATCACACATAATTATAATCCTATAACTATTAAACAGAAGCCTGGCTTTAATGAAGTGATTGAAAACTAGCATCGTCAGTAGATGAATAATTTGAAATTATGTACTACTGATGGGATGCAATGAGAAAAAGAGTGTCACCTGTAATTTTACTGCTAATAGAGATACTGGACATTCTAAATAATATTAACAACTTTTAAGGTCATGAAGTGGCCACTCACCCAAATCTGCCCTGGCCTTTTTGTATAAAACTAGCATACTGACACAACCTACTTAGCAGGAACCCAACGGAGAAGGTAGTGACAACCAAACCCTTCTCAGTACCATCTACACATAATGCATGCATGTGCACGTGCACACACATTCACACACACACACGCACATGCACACACACACATGCACATATACAGACACCCCACATGCACACACACAGGACATCTTCATTAGCCCAGAACAGGTACAATCATCATGCCCTTTGCTTATGGACACCCTCTCTTTGCCTGTCTCTATTTCCCTCACAGCCATGTCTTTGACTATTTCTGAAGGTTTAGGTGTGTAGCCTGAACATGAACGTTAGTATAAACTTTAGTATTGAGTAAACAATTTAGTATGGGTTTTGGCCACCATAACAGAGCAAGTCTCTGGTAGATAGGACAGAATTCAAAATGTGTCCTGATCCTTGATACAACTCAATATACTTCAGGTGATCATTCCTATAGAGCATATGGGAGCCAGAAATAAATGTTATCTGTGTCCTCTACCTATTCCACAGGTTTTGTTTTGTATTATAAATCATATAGTGTTTTTCTGTATATTTATAATTTAAATATACATGCATGGAAAATACGATGGTTTTAACTGTCAACTTGACATAATCTATAATCACTTACAAAGGGCATCTCACTTAGGGGTTGTCTATATCAGGGTGGCCCATGAGGATGCCTGTGAGGGATTTTCCTAACTGGATTAGTTGAGGTAGGATGATTCACCAGGAATGTGGGGAGCACCATTGCCTACCGTAGGTTCTGCAGGAGAGTGAGGCAAGCAGTAGAGGCAGGCATACATCCATCCTCACTCTGCTCTTGCCTGTGACTGTGACCAGTTGCTTTAAGTTCCTTCCACCTTGAATTGAATTGGGAGAAAAATTTATCCATTTTCCCCCTAACTTAATTTTTGCTTGGTTATTTTATCATAGCAACAGAAATGAAACTAAGCCAGAGAATGTCAACTACTCTGTAAGTTTTAACTTTAGAAAAATACACAGTAATTGTTCTTCCCAGATATAAAATTCTAACTTTGTCATGTGGTTCATCTGGGCTTTGCCTCATTGCTTATTACAGTACATAGCTTATTTTCTTTTTTATAATTTTATTTGAAAAAGGTTTGGTGCACAAATCATGTTCAAGGTGAAGCTTCAACAGCAGTTGATTTTCTCAGTAAATATCGTTTAGGTAGTATCCCTTTGGCTACTGTCCAACAACTCATGTCTCTATTTTTCTGTGAATATTTTGAAG
Seq C2 exon
AATCAAACCCAGGAGTGGTCACAGTCGTGTAAAGAAAGAGACATCCCCTGCTCTGATGACTACTCTCTTATGGGCACACTGGGAGAGGCCGTGACGATTCGAGCTTGGAATATCGCTGGGTTACCCTCTGACTCTTTCTCCATTGATAATGGGATCATTATAAT
VastDB Features
Vast-tools module Information
Secondary ID
-Dnahc7b:NM_001160386:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: