GgaINT0050162 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10697671-10698661:-
Coord C1 exon
chr7:10698476-10698661
Coord A exon
chr7:10697835-10698475
Coord C2 exon
chr7:10697671-10697834
Length
641 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATG
5' ss Score
1.16
3' ss Seq
TTGCTTCTTTTCTCATCTAGATG
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTTGACTTATGCTGCAAAAAAATGCAGCGAGCAGAGCAATTGATTGGAGGCCTTGGTGGTGAGAAAACTCGGTGGAATGAGACCGCTTTGGAGCTGGCAAGGCAGTACACCAATTTGACTGGAGATATACTTATTTCATCAGGAATTGTAGCTTACCTAGGAGCATTTACATCCAGCTACAGAAAA
Seq A exon
GTAATGTGCACCATAATTTCATGCATGTGTTTTGCAATAATCTATATTTAATTCACTTTAATTCTTCCTCCCCTCTTTTTTAAATCAATGTTCTTATTTTGTCCATTTTTCTCGAGAAAATGTCTCTTTCAAACTATTGTTTTCTTCATAATGTAAATATTTTGATATTACTGGTTTAAATCTTTTATAGAGAGCATTTATTTTGTAAGTATTTATAGTGTAAACAAACAGCAGATTTTACAAATCCCATTTAGATAATTTTGAGAGTGTTCTGTTTCATTCTTATAAGTGCATTTTAAGTAACTCTCACTTTGTGTCCGGGAAAGTAGGATTATTTTTGGTGAAATGCTGTATTCCTGGCAAGTGTAAATTCTAGCATAGATGATATATAAAAGACATGCGGAGGCATCTCTAACCAAATGAACATATATTTCATGTATAGAAATCACATGGAGAGGCATTTTTAGTGACATTTTTAGATATCCAATACAGAAGGTTGAGTTTCTTTCCGTTTGGAGATACAGCGATCTTGTCTGTAGCATATAGCGCAGGGAATGCATTGAAAACTGTATTTTTAATAGTTTTGGAAATATTGTAAATAGGCAGAACTTCCATTAGTATTTGCTTCTTTTCTCATCTAG
Seq C2 exon
ATGCAAACTAAAGAGTGGACATTACTATGCAAAGCAAAAAACATTCCTTGTTCTGATGATTTTTCCTTAACAACTACCTTGGGAGAGCCAGTGGAAATCAGAGCTTGGAATATTGCTGGGTTACCCTCTGACATGTTTTCTGTTGATAATGGCATCATTATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.4=100)
A:
NA
C2:
PF127772=MT=PD(2.3=14.5),PF127812=AAA_9=PU(12.6=52.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGAGCAGAGCAATTGAT
R:
TGATGCCATTATCAACAGAAAACA
Band lengths:
320-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]