DreINT0058190 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25240306-25240830:-
Coord C1 exon
chr9:25240711-25240830
Coord A exon
chr9:25240490-25240710
Coord C2 exon
chr9:25240306-25240489
Length
221 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGC
5' ss Score
6.58
3' ss Seq
CTTTCTTTTGTTCAAAAAAGTTG
3' ss Score
4.74
Exon sequences
Seq C1 exon
GAAGTTGCGCCTTATTGATGTAGAGGCCTTCCACAGTGAGGAGGAGTCTATGGAGTTATCTGTCTTTCAGCAGTTAGTCAACAAACACATTGAACGTGCCACAGGCATCCTTCTCAACAC
Seq A exon
GTAAGCACTCTCAGCTGTTTTCATACAGCATGCTTGTCAATGTATCATTGACCGAATGAATTAATCATCGCAACTATCTGCTAAATTTCGCTTACTACTCAACTTTGCAATATTCAGTTGATCACAAATATTCAAGCTTAGGCGCTTGAATTCAACAGACCGTACCCTGCAAAAACAATCCAAATAATTTGTTCATTTTTTCTTTCTTTTGTTCAAAAAAG
Seq C2 exon
TTGGATACCAGAAGTGCAGAAAATCTATCATCGTGGTAACAAGCGCAATCTGATCCCCAGCAACAGTAGTGTTGCACGACTGCAGTCTTTCTACAATTGTGTGGCCACACTCATGACCTCACAGCTCCAAAGCCTGGCACTTGAGTCTATGCAGGACTACACACACCTCATCGCCCAGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCTTATTGATGTAGAGGC
R:
GTTCTGGGCGATGAGGTGTG
Band lengths:
296-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]