MmuINT1008859 @ mm10
Intron Retention
Gene
ENSMUSG00000096141 | Dnah7a
Description
dynein, axonemal, heavy chain 7A [Source:MGI Symbol;Acc:MGI:2685838]
Coordinates
chr1:53635994-53640455:-
Coord C1 exon
chr1:53640336-53640455
Coord A exon
chr1:53636178-53640335
Coord C2 exon
chr1:53635994-53636177
Length
4158 bp
Sequences
Splice sites
5' ss Seq
AACGTAACG
5' ss Score
4.99
3' ss Seq
ATGTCTTTTGTTCTTTCAAGGTG
3' ss Score
10.79
Exon sequences
Seq C1 exon
GAAATTACGTTTAGTTGACATAGAAGAGTTTCACAGCTGCCAGGATGCATTAGAGCTGTCAGAATTTCAGAACATTGTCATTAAACACATGGAATCTGCCAAGGAGACGCTACTTAAAAC
Seq A exon
GTAACGTTTTGGACTCTCAGTAGGAATGTTTAAGCTTAAAGATGTGATTGGTGAAGTGTTTCATTTCAACAACTTTTAGAAAATCCACTTCAACAGGGTTTGTTTGTTTTTTTAAAAAACACATTTCTGTCTCAGAGTTAAATTTGTCCTTAGTTATCTTGGTCTGTAACGTGTCCAGATGTTGCAGACAGCAACAAGTAGAAAGAAGTTTAAATGCTTGTCACTAACAGAGGCCTTCTTGTAAATTTGTTGCTATGGCCTCTGCACTGTGAGCTGGTGGACACCAGGCAGAAACGATCATGCTCTAGTCACCACCAGGCTTTGTGTGACATCTACATGCCAGGCACAAGCTGTGCTCTCTCATGGCTTTGGGTGGGGAACATAAAAACATTTAGAGGATGACCCAGAAGGGAATGCATATGACTTTAAAAAGTTTGTGACTTCAATGATATTAGATCTATTAAAAAACAATTAAATATCTCCTTGGATTGGTCCTTCAGAATGGAATAGACACATATGATAATTAATTACATAGGTGCCAGACAATTACATGGGGCCACATAGGACAATTGTCTTTAGCTTGATCATTAATTTATTAAATATAGGACATTAAAATTAGGTCAAATTAAAATTAACAAAAGACACAAAAGTTTTGACCACCTCATAATTTCTAAAAGTTAAGTAGAAATGTATGTTGATCATTTAAGATTTTTAATTTTTTTTCTCCAATAAATTAAAATAATAATACTTTTTAAAAGTTAACCTTTTAATTTGATTATATATTAAGTTATATACCGTTGACAGAAAAATAAAAGTAGAGAGCAGATAAAGAATGGAGCTGTATAACAGTGCAGAGCAGATGATGACATCTTCAGGACAGGCCATGGATGGATTACCTCAGCCTGTAGCTCTGAGGACAAACCCCACCTCAAACTTGAATGAGATGGTGTCACAGAATAGAGTAGAGCTCAAAACTTCATTGACTTTTCTGATAAGAATGTAGATTGGTTATCATTGTGTGTTCCCACTCCTGGTGCATTCACACTGACTCGAAACACAGTTTGGTGAGCCAGGATGTGTTCATCATTACTGAAAGGCAGAAACCAGCTCACAGCAGACAAACTAGTGAAGTGAACTAGTGCCCTGCAGGTCCCCCTGGCCCTCAGCAGCTGCTATGCTCTGTCCACTTTCTAGACCTGCATCTCTATTTTTCTAGCTCTTCATTCACACCCCTGTAGTTTTTCTGACTTTCTTCACCTCATTGTCTCCTAAAAGGGGGACTCCCTGAGTCTTTTTCATCTTTACATCTACATCAATTCCATCATCCCGTTGGGCTGACCCACTGCAGCATCACATCTGTCCTCTGAGCTCTAGGCCCTTGCCAAGCACACAGAGCATATCCACCTATGTTCAAGTCACATCATGTCCATAACAATTACGTACTCTCTTCTAAGTCTGAGGTTCTTGGTCTGGACCATTGCCAGAGCACCCTAAACTCTGTGGCTTTTAAAAATCCTTATTGTTCATCTACAATTTCTCATTCCCTCCACACTGATCATAGCAGAGTACTATTTTTTGAGATATTATTTACTTACCATGACATTCACTTTTGTATAGGTGTAGAGCTGTGGCTTATATAGCATTCATACAACTGGGCAGTCATCACCACTAAGTTCCAGAAGGTTTTCTTTGCCCCAAAGCAACACTTTTTCCCTTGGCAGGCATTCCCCTTGTTCTCCATCCCACAAGCCTCTGCTGATCACTGATCCTAGTTTTGTGTCTGTTAACTTTTCTATTTGGGAAATTACATTTCAGCTGTATGTGGCCATTTCTTTTGGGTTTCTTATGGGAAGCATGTTTTTAAGCTTGTCTATGGTGTAGCACTGTGCTGGTTAGTTTTTGTCAACTTGATACAAACTAAAGACACCTGTGAAGAGGGAACCTCAAATGAGGACTTGCTTCTATCATACGACCATGGTCCCTTCTTGTCTTGAGTTTAGTTTGCTCTTTTTCTTTTGAAATATCTAGTGGAAATTGCTTGTATTTTAATATAGATGCTTAGAGCTAAAAATTCCCACTGTTCATTGATGTTTGTTTATTCCTCAGTTTAGTATATAATAATGTCATACTCACTCAAATTATTTTTGTAATTGGTCTTGTGATTTTTGTCTCTTTATGTCTGTGTATAGCTTATCTCCACATACTTGTGACTCTCCAGTCATCATGTTTTGATTTCTAGTTTTGCAGCTCAATCTTTTTATATCTATTAAGACCTATTTTCTGACTACCATTCATTGAGATGCCATCTGTGTCCCTTTTATCTTAATTCCCATTGCTTCTGCCATGGGCAGGCCCATTTTTACTGTGTGTGTTTGCACACACATGCACATATGTACATTCAAGCAATCATGTGTGCTGAGATGCCCACACATGTGCATGTGATGTTGTCCTTAGATGTCTCCACCTTGTTTTTAGAGACAGGTTTTCTGATTGGCTGAGGTTTGTGGGTTTGACTTTACTGGCTCTCTGGAAACCCCAGAGTTCCTCCAGTCTCTGTCCAACCAACACTGGAGTCTGGAGTGCACTGCTTTACTGGTGTTTTAATGTGTGTTCTAGGGACTGAACTCAGGTCCTCATGCTTACTCAGAAAGGACTTTACCAGCTGAGCTATCTTCCTAGCTGGCGGTTACCCAATATTTAGATAGCGCAGTGGTTCTCAACTTCCTCATGCTGTGACCCTTCAATACAGTTCTTCAGGCTGTGGTGACCCCCTACCATAAAATTATTTTGTTTGTACTTCATAACTGTAATTTTGCTACTGTTATGAATAATAATAACATATATATGCATATGTGATTTGCAGGATATCTGACATATGACCTCTGTGAAAGAGTCATGTGACTCTCAAAGAGGTCACAACCCACAGGTTGAGAATCATTGAGATAGACCCTTGCAAATTATAAATGACTTCTCCATTCCTGTGTTTCTGTAAATGTTCCCCTTCATTTTAGTATCTCTCATTTGTTGACAAAATAATAAGTACAGCTTCTTAACTTGTTTTGAAAACTTGCATTGTGACTCTTATCTCTCTTGTCCTCCCCTCTGAGCATCCTTTGACCTTGGGCTTATGGAAACATAGCATGAGTTCTTTTAGCTTTTACCCTATTTCTACCTCAAATGCTTCTGCTAGGGCTTTGGTAATTACTATTTTCATTGTAAAGCCTTTCTCCAAGATTTAAACGTAAAGTGTCTCTCTGTCCTTTGACTTCTAGCTATTTCCCATGATGCACCTACTGCTTTCATTATTATGAGCTGAAAAAATGATGTAATATCTTTTTATACCTTCTGAAATACTGTGCATAGGACATAAGTGGACTTGCAGTACATGTAAAGCAAAAGTTTATATTTAGAACTTAGATTTCTTCTGTTAGGACACTCTGATCATTTCTATCAACTATTGTTTAAAAGTTCATTATCCCTCATGGCAGAAAGTATCAGCGTTCTTTAATCTTGCAGTACCAACAAGGATTTTATAAGCTGAAAACTTCAGTGATTTTCAACATGAGGTACCTACATATGAAATTGCACCATTATTCTTTTATTACAAGGACACATACACCTTTGAAACTTCATTTTAAAACAGTCATTCTTTCAGTATTTCACATTAAGGGAAATTGGGAAAATAAAATCCATGATGTTTTTGATTTGTGCCTTGTTTTTAAGCTAAATGGGAAATGGGAACATGGCATACCATGTGAGTTTAACTTGGTATAAGCTAGCTCTTTGATCAGTTACTCACTCTATGGCTTTAAACTAACAGATATTCCATGGGGATCATTTAAGAGCCTGGAGAGAAGTGTCCAGTAAGGTTATTGCCTATATTTCTTCAAAACCTGCAGGAACTGTAATTGCAAAGGTAGATTTATGTCTTACAGCACACCATTATTGAGTCATTTTCTATTGGATATGACTTAAAATTTCTTTTCCTTGGAGAAGTGAAATACTCTAACACTTAGGGCTCAGAGAGGGGATAATGTCACTTAGCAATATACCCCTTTATGAAGACCTTTGGATGTCTAGAATTTACTGTTAATGCTTAATGTAAGTGGAAATATACACTGAGAGTATTGACTTCTAAATGTCTTTTGTTCTTTCAAG
Seq C2 exon
GTGGTTTCCAGAAGTGCAGAATATTTTTAACCAAGGCAATAAAAAAAAGCAATTGCCAACTGGCAAGAGCACTGCCAAATTGGACTCTTTTTTCAACTGCGCTGCTACACTCATGACCTTACAGCTGCAGGACCTCATTCTTGTCTCCATGCAAGACTTCACAGACCTCATCGCCCAACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096141:ENSMUST00000094964:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types