GgaINT1011578 @ galGal4
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9267328-9269977:-
Coord C1 exon
chr7:9269858-9269977
Coord A exon
chr7:9267512-9269857
Coord C2 exon
chr7:9267328-9267511
Length
2346 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGA
5' ss Score
3.33
3' ss Seq
AAATATTGTATGCTCTTTAGGTG
3' ss Score
6.64
Exon sequences
Seq C1 exon
AAATTTACGCCTTCTTGACACAGATCTGTTTCACAATAAACAGGAAGCTGAGGAACTTGCATCTTTCCAGATTAAAGTCATCCAGGAAATTGGAAAATCCAAAGCTGTTCTATCTAGGAA
Seq A exon
GTATGATCTAGTGTATCCATATATTTTAAGTTACAGGGAAATCTTTTTCTTGGGGTGTTTTTGAGATTCTGGATTTTGCAGAGACAGAAGAAATGACCAGTTTTAATAGTACGCATTGAAGAAAGAAATGCGGTGTTTTGAAACGCTTTGAGGATAGTGAATGAAAGTATTTTTGTAAATGTTGAGCTTACTATGATTTGTCATTTTCTTGTTCTAAATTCTGCTGTGTTGTGTTTTGCTTTTTATCTCCTATAGGGCACAGATTCATTGAAAATTGGATAATTAGTGGGATGTGATCAGTATTTTAGTCTATTTTGAGAAAAAAGCTTTTATTTTGAGGACTCCCTTGTCATCTAATTGCTGTTCTTAAAAGAATAGTTGGAGCTATTTCAGATTACTCTGCTTTTTAAAGTTCCCCTGTTTTTTTTTCCTCCCTGTTTTCACACCATTGAAAACAGCTATAATACTGAATTTTGAAGAGATGCATTGAAAAAGTGCAGTGTTGCTACTATCAATAATTTTTGACATTAAAAGTAAATTGTGATGGAATTTATATGTAATAAGACTTGCTCCACCCCTACTTTAAAGAAAGCGCTGCCTATAGATAGGAGTAACTGTAATTACCCTAATGTTAGATTAATAACAACACCCATGTAGAACTTCTGTAAATGAGTTTGATATTTCAGTTTGTATATTCTCACTTTTTAACCATTTTTCAAACCAGCATCATCTAAAGAATATTTTTCAAAAACCCTCTTACACTATTGTATGGCAAACAGGTATACAGATTGTAAGGTATAGGACCAGACTGATTATCACATTGTAAAGGAAAAATGAAATAAAGAGCTTACCCATATCCTAGGCTCACAGAAGGATTCCAAGGGGGATGATCTCCAGATGGAGATCCTTCTTCCTTGGGAGTCAGCCCTTAAATGGGGTCTAGGAGGTCTGGTCACTCAGGTGAAATTGCATTCACCTGTGCCCCTGCAGCTGACTCAGCCCTTGCCTCAGGTGTTCAATCAGAGTTTCAGGCGGTGATTCAGCAGTTCCCATACACACTATAATGTCAAAGGATGTCATTAATAAAACAAAGTGTTTGAGCCCCATAATATTTGTATATCCATCCAGCAGAATTTCTGAAAGAAGGGCAGTTTTCTTGTTATTGTGCTCAATATGCTGCAGTAGAAGCACTGTAATTACTAGGTCTTTTTTAGATATTTGTAGCCATGCTGTATTGTTTGTATGCATCCGATCTTTATTCAGTAGTCACAGAATTGCAGGGGTTGGAAGGGACCTCTAGAGATCATCCAGTCCAACCCCCAGTGGTTGCTTCCTGCTATTATTTACTACTGCTCTTTTACTATTTTAGATTTTAATTAAGAAGAACAGCTGTTGTATTTACTCAATTCCTGATTGTTTAGGGTTGTGGTTTTTCTTGTTTGTCAGTTGGTTTTTTTTTTTTCATGTTATGGAAAGTTTTTATTTCCGCTTTTGTTTATAATTGTGTTAGTAACTACCTCAACTATTTTCATATGTATTTCTTTCTGACCCTGAAAATATCTTTGTGTTCTTAACTGAAGAATCATACAATGGCCTGGGTTGAAAAGGACCACAATAATCATAGAGTTTCAACCCCCTTGCTATGTGCAGGGTCACCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCTAGGGGTAGGGCATCCACAACCTCTTTGGGCAACCTGTTCCAGTGCGCCACCACTCTGTGTGTGAAAAACTAATATCTGAGCTAAACTTCACCTGTCTCAGTTTAAAACCGCTCCCCCTTGTCCTATTACTATCCACCCTTGTAAACAGTTGTAATGCTGCATACTTTTGTGCTTTCATCTTTCCTATTTCGCTCCAGTGCTAGAGCCAGGTTGGCACAATTTTGGCTAAGAGTGGCAGGGTGGAGTTCTCTATGGAAAACTTTGGCATCTAAAATCTACTAAGGTTAAAAGATGGATAAGGAATTGTGTGGTCTCTGGGACTTAAGTATGCTGCCTATGAAGGCTTTCTGTTTTTGTGGACTTGAGAAATAGGAGACTAATGCAGTGGATTTGTCTGTCATGGTACTTTTTATTTTAAATATGGTTCCATAGTAGTAGATAACATTTTAAGATACATGATTCCTTTGAATTTAAAGGTACTACCATATGAGCTAGTTACGTTATAGCTTCCCAAGTATACTGTAGCATCTTTTGTTCATGCATGTACTTATAAGCATTCAGCAATTAACTTAAAACTGTAGGTTCATTAATACTAAAGACTTGAAGAACTTACAGAAATATTGTATGCTCTTTAG
Seq C2 exon
GTGGCTTCCAGAAGTGCAGAAAATCTTTTACCAAAGTAATAAAAAAAAGCAAATACCCAGTTATACCAGCACTGCTAAATTAGAGGCTTTCTTCAGATGTGCTGCCACTTTAATGACCCGTCAACTGCAACAATTACTTTTACAATCAATTCAGGACTTCACAGATTTAATTGTTCAACCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]