DreINT0058216 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21354489-21357029:+
Coord C1 exon
chr1:21354489-21354650
Coord A exon
chr1:21354651-21356891
Coord C2 exon
chr1:21356892-21357029
Length
2241 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
AATGGTAATTGTGTGTTTAGATG
3' ss Score
5.41
Exon sequences
Seq C1 exon
GATCGCTGTTACCTCTGCCTAATGGGAGCGCTGCAGCTGGATCTCGGAGGAGCTCCTGCAGGTCCAGCAGGCACAGGCAAAACTGAGACCACAAAAGACCTTGCAAAGGCTCTGGCAATCCAATGTGTGGTGTTTAACTGCTCAGATGGACTTGACTATAAG
Seq A exon
GTGCCTCTCTGTCTTCATGATGAATTTGTTAAGCAACTAGACACTAAAACAAGATTTTCCTGTTCAGTGTAAACATTTGTGTTATTACACTGAAATGAACTAAACTGAACTGTGAAAACTGGACCGAAGCAGTTTACTAGAATGTCATTTATGTTAAGCTGCTTTGACACAATCTACATTGCAAAAGTGCTATAGAAATAATGATGAAATGAAAATATGAACCCTACCGTACTAGAGTGAAAAAATTCCTCTGTCACTAGGAGGCAGCACAGCCCCAACTGAATTCTTTCTACATTACATGAAACCCACTGTAGATCTCAATTCTGAGAGTTTTACCTTGCATGCTGTCCTTATTTATGGCCAGTGTTTAGTGTTTGCTTGGGGAGTCATACAGAATATCATAAAGGTTTTTTAAGATTCTGACTGGACTTTAAAATAGGCATAGTCTTTGTACACTGTTTGTCTTTTTTATGCTGTCACTACATTATATTATAATATAGATTTTTTATGTACTGTAGACTAATCCTTTCTCTGGAGGTTTGCTATAGGCTGGGGGGGGGGGGGGGTGATATTGCTGCTCAGTGCATGTGATCACGTGAGAATGACATACTGTAGATCAGTGTATAGCTTTTAAATCAGCACAGGGCTGCAGACTAACATTTGAGAGCACTTTCACTGGTGCTTTAGTACTACAGAGGGGTCACCGAAACATGATTTGGCAGCACTGAGCACATTATATTAAGAATAGTTCAAGTCATGTATATTAAAATAAACATTTGAGAGCAGCATGAATGGGATCCAGATGTAAATGTATTAATCAGTGCATATAAATAGCAAAAACAGTACCATCTGTGAAAATAGTAACAGCCTTATATTTGCGCAATTGTAAACATTATGCACAAATATACTGTAACAACCTCACATCATAGTAAAAAATAACCTATCTTCATGCTTTATGACATTTGTTATGAATAACAAAAAAAAAAAAAAAACACAACTAATGTGAATTATTTAGATAAATATAGTAATCACATTACTTTTTTATTAAGCATTTTATGCATAACATAAAATTTAATATGAATATCCCACATTTCTGCCTGTTAGTGTTGCTACAGTAAAACTGCGGTAATAGTTAGTGAATTGTGGAACAAAAAGCCTTATAACCTAAACATTATTGCCATTTCAGTTTTTTTTTTTTTTTTTTTTTGCCGAACTACTACTAAAACTTACTAAAACTACTCTACTTGAGTCCACATATGCATAGGAAAGCTATGCAAATGAATGCAGTGGAATGTAAAAACATAGCTCATGTGAACATGTCTTCTTAATTTATGCATTATCTGTAATTTATCTGTAAAATTATTGGTTGTATTCTTTTTTTGGCAGAGTTAGAGTTAAATTACAAGCTGTATTTGTTTGTCTCAGCCCTGTTGTACAATATATAGTACTCTATTTTCATTTAAACCTCTAAAGGCCCATCCACACCAAGCGCAATAACTATGAAGAATAGAATAAAATATAAGGGTGGAGTTAAAAAACAATGTATGAATGTAAAACAACAGCAGATTTCTAACCACAGCTATAACAGTAATGATGTAGAGAGACTCTATCCTTGGAATCACTTTCAGAATGATATTGCCCCGCTATTAAATAGAAAAACACTGACAGCCAGTCAGAATTCGTTGAAGTACTGTATACAGGTCATCGTCTTTTCAAATATTATTTAAAGATAATGACCTAATGATCCAGAAAGCAGTATTTGACCATTATAACCAATTATTGCTTAGACCATGGGAAAAAAATTATAAAAATACATGAAAGTTATGCAAGCCAGGATAGCAAATGAAAGCATAAAAATTAACTTACCTCAAATATCCAATATTAGTTTAAGCTTTATGTTTCATTCTTTGAAAAATATAAGGAAAATAGTTGAGAATGTAGGCAAAATAAATGAATGTTGTTTTTATTACACTACACTGCCTGAGGTTGCTATATTCAATTGGCAAGATTAAACTTTAGGTAAGTTTTAAATAAAGATTCGCTATTCATATGCGCTAGTAGCACACTGAGGACATCTGCTGGTTACAGGGTGGTAATGCCGAATTAAAAGCATTGTGTGTGTGGATGCAAATATATTTATATTTCAATAGATACTTATAGTTATTGTGCTTGGTATGAAAGTCATTTAGAGTGTTAAGTATTCAGCTTGGTTAAAGTTTTAAATGGTAATTGTGTGTTTAG
Seq C2 exon
ATGATGGGGACATTCTTCAGCGGTTTGGCTCAGTCAGGTGCCTGGTGCTGCTTTGATGAGTTCAATCGCATTAACATCGAAGTGCTGTCAGTCATTGCTCAACAACTTATCACTATTAGAAATGCCAAGGCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.9=100)
A:
NA
C2:
PF127742=AAA_6=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]