DreINT0058238 @ danRer10
Intron Retention
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21409464-21411552:+
Coord C1 exon
chr1:21409464-21409706
Coord A exon
chr1:21409707-21411384
Coord C2 exon
chr1:21411385-21411552
Length
1678 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
ATGTGCTTTGATCTACACAGGCA
3' ss Score
7.91
Exon sequences
Seq C1 exon
TGGCCCCGTGAAGCTCTGCTATCTGTGTCTCAGACCTTCTTCCAGAATGTGGAGTTTGGCAGTGAGGAGATGAAGCAGTGCTTTTCAGAGATGTGTGTGGAGATTCATGTTAGTGTGACTGACATGGCTGAGCGTTTTTACTCAGAACTAAGGAGACACTACTACACCACACCGACCTCCTATTTGGAGCTCATTAACCTGTACCTGGGCATGCTGGGAGAAAAGAGACAACAGCTGCAGGCG
Seq A exon
GTGAGGATGAGTGATGGATAATGCATTAGTCTCTTATGTTGTTACACCGTTACTTAAAGGGGCTATATGTAGAAATGTTCTTGTATTAGCTGTTATTAATGGACAAAGTGTGAACCGCTTGCAATACAACATTTTATAAACGAGACCTCCTTTTTTTCAGGATAACAAACAAGTTTTTAAGATTTCTGTATTCCCCAAACTATTTAGATAAGACTTGGTTTTGAATGAACTGCCCAGAGATGTTGCAAATGTTGGCGCTGAGTTGATAGACTTTCCTTGAAAGGGACTTTGATCCCATTGTATCTCTTGTATGTGTGCATTAGTGCAAATTGGAAGGCTGCAGTTCACTAAAGGCTGATTTATACTTCTGCGTCAAACGCCGGCGTATGCTACGGCGCTGACGCATAGCCCTTCGCCGTGGCCGTCAGCGTCGCTGATGTGCACCTTTCAAAAAATGTAACTACACGTGGCAACGACGCGTAGCGCAAGCTCTGTGATTGGTCGGCTTGGTAGCGCTGACGAGTCTGGGCGGGACTGAGAGCCGCGTGAATGGTGTGAGCCTGATGGAGCGATTGTTTACAAGTGTGGAGTCCCGTGAAGGAGCTCCGGATGGAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTTCGCCGGTTCCTGCCTTAAAATGAGCGAGTTTGAGCCACTTGAACATCCCGGAAGTGTTCAGGAAAAGCAAAACAGCAGCGAAGAAACTCGACACAGAGGAACATTTACACCTCACTGCCAACTAGCGTTTCGGAAGTGTTAATGCAGACCAACAGAGACACCGCGCAGAAGTATAATTGCACAGCTACGCGCGTTGCATGCGCCGTGGGTTACGCCGGTCACTTGACGCAGAAGTATAAACCAGGCTTAAATGGCCACCAGTGTTTCAGACCAGCACCATATTAACAAACACAGGGTCATTCTCAAAACATAGCCGTATACAGTATACTTTTCTGGAGATTGCGAATTATGTAGCCAAAGTACGTATGGCTGCATTTCTACATTAAATGAATTCTATGGGATGGTATAACGCTGTTCCTTTTCGCGCTTACCAGCTGACCGATTACCTTAGTGTGCATGGCTTTCCTGTTGTTACCAGTTTGTCCAGTTAGCTCACCATGTACATCGGTGAACTTGACACACAGAGAAGAGTTGACTACCACAAAGGGGTTTGAGTCTGGTGAAGAATGGTTCCAATTTGTGCTTTTGAAAACACTATCGGTTGGGTTTAGGGAAGGAGGACAATGGGTCAGTTGATCAGACAGTCAGTCATTCAGTCAGCCGACAGTGGCCTCTGGTGGATTTACACGAGAAAAGGTGGCTCTTGCGAGAGAAATATGAGCTCTCAAAACGCGTACACATCGGTGTGGTGGATTCGTGAAAACAAAAAAAGAAAAAAAAAGAAAAAAAAAAAAAACCTCCCAGGATGAATTTGGTGCTCCCTAGAATTGTATATAGCGGTACGTTTTCAGAATGAGCCTGGGTTTCAACTGAATTTTTGTAATAAAATTTAATTTAAAAAGTTGAACATTGAAATAATGAATGTCAATCATTTTTTTGTTAGATAAAAGCATCTATATTAAAATAAGCAATTTTGCTTAAGCAAGACTTGGAAATGCAATGTGCTTTGATCTACACAG
Seq C2 exon
GCACGAGACCGCATCAAAAATGGTCTAACTAAATTGCTGGAGACAAATGAGCTGGTTGATAAGATGAAGCAAGACCTCTCGGCTCTGGAGCCAGTGCTTGCGCAGAAATCAATCGATGTCAGTGCTCTTATGGAGAAACTTGCCGTGGACCAAGAAAACGCGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606:ENSDART00000141317:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(26.3=87.7)
A:
NA
C2:
PF127772=MT=PU(15.8=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTGGCAGTGAGGAGA
R:
TTGGTCCACGGCAAGTTTCTC
Band lengths:
347-2025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]